AMCG00011296


Basic Information

Item Value
gene id AMCG00011296
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17009308 ~ 17019306 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011296
ttttttttttctcagtataAATATGCACGGTACATGTGTAAACAggtgcaataataaaatatactgctCTTCCGTTTGTCTCACACCCCAGAGCAGGGAACTAATAAAGTTATTCCGTAGGTTGAGCTGGAACGCATAGGCACGCTTCCTCCTCGCACGGGTGACGTCAGCGCCGCGTCTGCGTGCTACGGGAGCAGTTTTGCCAgcctttctttctgttgctTTCCACGTTTCTCCAGCTGATAAGCATGGTCATTACAGTGGAAATAAGGAAGATGTACAAGTATCCCTTTGAACGCGTGGTAGATATGCACTTTAACAAGTATCCTACTCCTCTCGAGGAACATGTCAGAGGCATTCAAactgtagaagaaaaaatagACCGCATTTCAGGAATTATTTACAGAAGGAGGATAGCAACCTGCAACAATGTGCTGCCTAACTTCTTAAAAAAGGTTAACATCTTTAATGTTAATGACGTCTATCTTGAAGAGGAATCCTGGCTGGATAGGAAGCAAAGAATTATGAATGTAAAAAGCCATTGTCTAACATGGACCCAGTATGCAACCCTACACGAAGTGTCTGTTTTCAGAGAAAGTGCAGCTAACCCaaactggaCTGAATTCTGCCAGCAAGGAAGTATCGCGGTCACTGGTGTTGGTAAACTGAACAGGTTGATTGAAGTATTTGCCAAGTCATTTTTCAGCAAAGGAGTGAAAAAAGCTAAATCAAGCGGACTGTGA

Function

GO:

id name namespace
GO:0044428 obsolete nuclear part cellular_component

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011296 True 743 mRNA 0.43 6 17009308 17019306

Neighbor

gene id symbol gene type direction distance location
AMCG00011295 NA coding upstream 1022 17006454 ~ 17008286 (+)
AMCG00011288 lars,LOC102775971 coding upstream 31848 16962316 ~ 16977460 (+)
AMCG00011287 rad50,LOC107684216 coding upstream 114383 16865367 ~ 16894925 (+)
AMCG00011289 p4ha2,LOC102786823 coding upstream 166612 16827176 ~ 16842696 (+)
AMCG00011285 NA coding upstream 253529 16748231 ~ 16755779 (+)
AMCG00011298 yipf5,LOC107713174,LOC102777143 coding downstream 200382 17219688 ~ 17222519 (+)
AMCG00011302 NA coding downstream 240709 17260015 ~ 17261217 (+)
AMCG00011300 LOC105025958 coding downstream 276237 17295543 ~ 17307824 (+)
AMCG00011309 NA coding downstream 398289 17417595 ~ 17426498 (+)
AMCG00011307 rasgef1c,LOC102777120 coding downstream 525459 17544765 ~ 17556370 (+)
G105538 NA non-coding upstream 284155 16724688 ~ 16725153 (+)
G105466 NA non-coding upstream 809009 16200049 ~ 16200299 (+)
G105448 NA non-coding upstream 876321 16132758 ~ 16132987 (+)
G105438 NA non-coding upstream 941866 16067233 ~ 16067442 (+)
G105436 NA non-coding upstream 945559 16062914 ~ 16063749 (+)
G105684 NA non-coding downstream 290453 17309759 ~ 17312068 (+)
G105715 NA non-coding downstream 359314 17378620 ~ 17378860 (+)
G105756 NA non-coding downstream 715684 17734990 ~ 17742387 (+)
G105769 NA non-coding downstream 731944 17751250 ~ 17751484 (+)
G105776 phykpl,LOC100691570 non-coding downstream 746585 17765891 ~ 17768221 (+)
AMCG00011293 plac8l1 other upstream 27067 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 898927 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 1025229 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 1135819 15863032 ~ 15873489 (+)
AMCG00011252 NA other upstream 1153524 15853764 ~ 15855784 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 764857 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 2087967 19107273 ~ 19117369 (+)
G105916 NA other downstream 2202749 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 3075923 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 3276705 20296011 ~ 20339325 (+)

Expression


Co-expression Network