AMCG00011297 (kctd16,LOC106603861)


Basic Information

Item Value
gene id AMCG00011297
gene name kctd16,LOC106603861
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17148015 ~ 17159586 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011297
ATGGAGTCTGCAGGGCAGCACGACTTCAGTGGCCCATCACGGTGGGCATCCCCCCACTGCGACTGttgctgtaaaaacaacaaaggagACCGGGAAGGGGAGAGCGGGACTTCCTTCAACGAACTCTCCACCTCCAGCTCGGAGAGTCAGTCGGAGGCCAGCTCTCCCCAGGAAACAGTGATTTGTGGTCCGGTGACTCGGCAGCCCAACATACAGACTCTGGACCGGCCGCTGAAGAAAGGTCCagtgcagctgctgcagcagtcCGAGCTCCGCAGGAAGAGTGACCTGCTGAGGACACTGACCAGCAGCTCCCGCGAGTCCAACGTCTGCAAAAAGAAGCCCGCGAAGGAAAAACTGACCATCGAGGAAGAGCTGGAGAAATGCATTGAGGATTTccgcaaaataaaaatcccagaCAGGTTCCCAGAGAGGAAATATATGTGGCAGTCTGAACTTCTAAGAAAATACCACCTCTAA

Function

symbol description
kctd16 Predicted to be involved in protein homooligomerization. Predicted to act upstream of or within regulation of G protein-coupled receptor signaling pathway. Predicted to be located in cell projection. Predicted to be part of receptor complex. Predicted to be active in postsynaptic membrane and presynaptic membrane.

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD16

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011297 True 480 mRNA 0.55 2 17148015 17159586

Neighbor

gene id symbol gene type direction distance location
AMCG00011294 NA coding downstream 143511 16978598 ~ 17004504 (-)
AMCG00011291 pou4f3,LOC106603866,LOC106567605 coding downstream 212173 16934506 ~ 16935842 (-)
AMCG00011292 kif3a coding downstream 227821 16910320 ~ 16920194 (-)
AMCG00011286 NA coding downstream 343725 16776351 ~ 16804290 (-)
AMCG00011282 NA coding downstream 383520 16753656 ~ 16764495 (-)
AMCG00011299 kctd16,LOC106603861 coding upstream 14111 17173697 ~ 17203530 (-)
AMCG00011301 arhgap26,LOC107713172,LOC107661718 coding upstream 152865 17312451 ~ 17342762 (-)
AMCG00011304 NA coding upstream 220140 17379726 ~ 17395987 (-)
AMCG00011303 NA coding upstream 274916 17434502 ~ 17452768 (-)
AMCG00011311 NA coding upstream 602324 17761910 ~ 17773165 (-)
G105607 NA non-coding downstream 252941 16893960 ~ 16895074 (-)
G105553 NA non-coding downstream 422862 16655247 ~ 16725153 (-)
G105479 NA non-coding downstream 900714 16244696 ~ 16247301 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 910330 16236128 ~ 16237685 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding downstream 1006677 16139099 ~ 16141338 (-)
G105701 NA non-coding upstream 150204 17309790 ~ 17312068 (-)
G105752 NA non-coding upstream 399816 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 404583 17564169 ~ 17566963 (-)
G105774 NA non-coding upstream 594741 17754327 ~ 17755758 (-)
G105782 NA non-coding upstream 637857 17797443 ~ 17800287 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 186946 16943932 ~ 16961069 (-)
AMCG00011271 LOC107562913 other downstream 1049836 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 1174143 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 1632340 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 1774836 15370402 ~ 15373179 (-)
AMCG00011313 NA other upstream 558040 17717626 ~ 17751099 (-)
G105770 NA other upstream 591667 17751253 ~ 17751502 (-)
G105793 NA other upstream 840082 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 1021060 18180646 ~ 18191195 (-)
G105890 NA other upstream 1942707 19102293 ~ 19105269 (-)

Expression


Co-expression Network