AMCG00011299 (kctd16,LOC106603861)


Basic Information

Item Value
gene id AMCG00011299
gene name kctd16,LOC106603861
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17173697 ~ 17203530 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011299
ATGGCCTTGAGTGGGAACTGTAGGACTTACCCGCAGACCAAAGATCCAGGGTCTGTCCAGAATTCATTCCCGGAGGTTGTGGAGCTAAATGTGGGTGGGCAAGTGTATTTCACCCGCCACACAACCTTAATCAGCATCCCCAATTCCCTACTGGGAAAAATATTCTCCGCCAAGAAGGACCCTTCTAACGACTTGGCACGGGACACCAAAGGCCGGTACTTTCTCGACAGGGATGGGTTTCTCTTTCGGTATGTCTTAGACTATCTCAGAGACAAGCAGGTCGTCCTACCTGACCACTTCCCCGAGAAAGGCAGGCTAAAGAGGGAAGCGGAATACTTCCAACTGCCAGAGCTGGTGAAGATCTTAACCCCCGATGACCTGAAGCAGAGCCCAGATGACCTTTTCCACAGTGATTTCGAAGAGGCTTCCCAAGGCAGCGATCAGCGGATATGCCCGCCATCATCACTGGTGCCAGCCGATCGGAAATATGGTTTCATTACAGTGGGGTACAGGGGGTCCTGCACCATGGGCAGAGAGAGCCAAACTGATGCCAAGTTCAGAAGGGTGCCGAGGATCTTGATCTGTGGGAGGATTGCCTTAGCGAAAGAGGTCTTTGGGGACACTTTAAACGAGAGCAGGGACCCCGACCGACCCCCAGAGAGATACACGTCCAGGTTTTATCTGAAGTTCAAGCACCTGGAGAGAGCTTTTGACATGCTGTCCGAGTGTGGATTCCAGATGGTCGCCTGTAACTCGTCGGTGACGGCTTCCTTTGTCAATCAATACACAGAGGACAAGATCTGGTCCAGTTACACAGAATATGTCTTCTACCATGTGAACTGA

Function

symbol description
kctd16 Predicted to be involved in protein homooligomerization. Predicted to act upstream of or within regulation of G protein-coupled receptor signaling pathway. Predicted to be located in cell projection. Predicted to be part of receptor complex. Predicted to be active in postsynaptic membrane and presynaptic membrane.

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD16

GO: NA

KEGG:

id description
K21918 KCTD8_12_16; BTB/POZ domain-containing protein KCTD8/12/16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011299 True 843 mRNA 0.52 2 17173697 17203530

Neighbor

gene id symbol gene type direction distance location
AMCG00011297 kctd16,LOC106603861 coding downstream 14111 17148015 ~ 17159586 (-)
AMCG00011294 NA coding downstream 169193 16978598 ~ 17004504 (-)
AMCG00011291 pou4f3,LOC106603866,LOC106567605 coding downstream 237855 16934506 ~ 16935842 (-)
AMCG00011292 kif3a coding downstream 253503 16910320 ~ 16920194 (-)
AMCG00011286 NA coding downstream 369407 16776351 ~ 16804290 (-)
AMCG00011301 arhgap26,LOC107713172,LOC107661718 coding upstream 108921 17312451 ~ 17342762 (-)
AMCG00011304 NA coding upstream 176196 17379726 ~ 17395987 (-)
AMCG00011303 NA coding upstream 230972 17434502 ~ 17452768 (-)
AMCG00011311 NA coding upstream 558380 17761910 ~ 17773165 (-)
AMCG00011315 LOC106604410,LOC107752029,LOC107743918,LOC107602558 coding upstream 580510 17784040 ~ 17785842 (-)
G105607 NA non-coding downstream 278623 16893960 ~ 16895074 (-)
G105553 NA non-coding downstream 448544 16655247 ~ 16725153 (-)
G105479 NA non-coding downstream 926396 16244696 ~ 16247301 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 936012 16236128 ~ 16237685 (-)
G105454 zgc:56064,LOC102205414,LOC107684868,LOC107564119 non-coding downstream 1032359 16139099 ~ 16141338 (-)
G105701 NA non-coding upstream 106260 17309790 ~ 17312068 (-)
G105752 NA non-coding upstream 355872 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 360639 17564169 ~ 17566963 (-)
G105774 NA non-coding upstream 550797 17754327 ~ 17755758 (-)
G105782 NA non-coding upstream 593913 17797443 ~ 17800287 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 212628 16943932 ~ 16961069 (-)
AMCG00011271 LOC107562913 other downstream 1075518 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 1199825 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 1658022 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 1800518 15370402 ~ 15373179 (-)
AMCG00011313 NA other upstream 514096 17717626 ~ 17751099 (-)
G105770 NA other upstream 547723 17751253 ~ 17751502 (-)
G105793 NA other upstream 796138 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 977116 18180646 ~ 18191195 (-)
G105890 NA other upstream 1898763 19102293 ~ 19105269 (-)

Expression


Co-expression Network