AMCG00011301 (arhgap26,LOC107713172,LOC107661718)


Basic Information

Item Value
gene id AMCG00011301
gene name arhgap26,LOC107713172,LOC107661718
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17312451 ~ 17342762 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011301
CAACTCTCTCTTACAGATCTGTCTTCAGCAAAGAGGAAATTTGCAGAATCTCTTAATGAATTCAAGTTTCAGTGTATAGGAGACGCTGAGACGGATGATGAAATATGCATTGCTCGCTCACTGCAGGAGTTCGCAGGCGTGCTGAAGAACCTGGAGGATGAGAGGGCGCGGATGATTGAAAACGCAGGTGATGTCCTGATCACACCCCTGGAGCGCTTCCGCAAGGAACAGATCGGTGCTGCAAAGGAAGCCAAAAAGAAGTACGACAAAGAGACTGAAAAATACTGTAGCGTCTTGGAGAAGCACTTAAGTCTGTCCTCTAAGAAGAAAGAATCTCACCTCCATGATGCTGACGCACAGGTGGACCACGTGCGGCAGCATTTCTATGAAGCATCCCTGGAGTACGTCTTCAAAGTGCAGGAGGTCCAGGAGAGGAAGATGTTTGAGTTTGTAGAGCCTTTGCTAGCTTTCCTTCAAGGGTTGTTCACATACTACCACCATGGATATGAACTGGCCAAAGACTTCAACCATTTCAAGACGGATCTTACCATCAGCATCCAAAATACAAGGAATCGGTTTGAGAGCACGCGGTCTGAGGTGGAATGTCTGATGGGGAAGATGAAGGAAAACCCCCACGAGCACAAGAGTGTCAGCCCCAACACCATGGAGGGCTATCTCTTTGTCCAGGAGAAGCGCTCCTTTGTGTCTGCCTGGGTGAAGCACTATTGCACTTACCACCGTGAGCCCAAACTCATGACCATGGTCCTCTTCGACCAGAAATCTGGAGGGAAAGTGgGGGAAGAGGAGTCCTTCACCCTAAAGTCCTGCACGCGGAGAAAGACCGACTCCATAGAGAAGAGGTTCTGCTTCGACGTGGAGGCCGTGGACCGGGCGGGGGTGATCACAATGCAGGCCCTGTCAGAGGAGGACCGCCGCCTGTGGATGGAGGCGATGGATGGCAGAGAGCCGGTGTACAACTTGAACAAAGACAGTCAGAGTGAAGGCActGCTCAGTTGGATAGCATTGGTTTTAATATAATGAAGAAATTCATCCATGCAGTGGAGACTAGAGGAATCAACGAACAAGGCCTCTACAGGATTGTGGGAGTCAATTCCAGAGTTCAGAAGCTAATTAGCCTTTCAATGGATCCAAAAACATCTGCAGAAGTTGACCTAGACAGCTCCTCGGAGTGGGAGATTAAAACCATCACCAGCGCTCTGAAGCACTATCTGAGaatgCTGCCAGCTCCACTCATGACCTACCAGTATCAAAGAAGCTTTATCAAAGCAGCCaaactGGACAATCCAGAGGCTCGGATCTCAGAGATTCACAATGTTATTCACCGACTCCCAGAGAAGAACCGGCAGATGCTGGAGCTCCTAACGAAGCACTTGGCCAACGTGGCCGACCACCACCAGCAGAACCTGATGACTGTGGCCAACCTGGGTGTGGTGTTCGGGCCCACACTGCTGCGGTCCCAGGAGGAGACGGTGGCGGCCATCATGGACATCAAGTTCCAGAACATTGTCATCGAGATCCTGATCGAGAATCACGAGCGGATCTTCAGCGGCGTGCCCAGCGGCGGCTCGGCCCAGGTGAactcccagcagcccctgccTCGGCGTCGGAGCGCGGAGTGTAAGCCCCCCTCGTGCAGCGAGAGACCCCTGACGCTCTTCCACACGCCGCCGCCAGTGGAGAAAGAGAAGAGGGACAGTGTGTTTAATTCCAGCGCAGAGTCCATCGTGACCAACGCTTCGGTCAACTCCAACTCCAACAGCAACGCCAAGCCCAGTCTCAACAACCTCAACTGTAGCGACACGGACCTGGACACGGTGATAGGGAAACAGAGCCGGCCCAACTCTCTGTTGAACCCAAAGAACAGATCAAGTGTCCCAACAAGCCCCGCCTCTCCCAGCCCCACGTCGCCACGCTCCCCCTCCTGGCCGATGTTTTCAGCACCGTCCAGCCCCCTGCCGGCATCCTCCACTTCCAGCGACTCCTCCCCGGCCAGTCCGACCCTGCGGAAGGCCCGGGCCCTGTACGCCTGCAAGGCGGAGCACGACTCGGAGCTCTCCTTCACAGCTGGCACCATCTTTGAAAACGTTCATCCATCACGAGAGCCAGGCTGGCTGGAAGGCACGCTAGATGGGAAGACTGGTTTAATACCTGAGAACTACGTGGAGTTTGTATAGCCCAAGCCTCTGTACTCTGATGTTGACGGAGCAGCGAAGGAAGACGATGAGGACCCTGGGGGGCTGCAGTCAGAGAGACCGCCCACAGGAAGACCGTGTGCTGGTTGGTCTGTGTCAGCGGGTGTGTACATATACGTGTGTGCTGTCTTCAGAACATCTCGTGCTTTAAGGGGCCCGGCTTCTTCTCTAATGGGTATTGTGACTGCGCTTTCAGCAGAAGAGGGACTTCAGGAGACATTTGTTCGATGAAAAATTCAGTGGCCTTAAATTTCCAGAGAGGAGTGTGATGGCTTTGTCCCAGGGCTACCTTATCCCCTCTCCCCCATCTCCAGTCCAGTCTGTTTTAAGTGCAGTTCCAGAATCGGCCGGCCATATTATCaagtacaaattaaatgaacaactttgatgtaatgatttttttttccctgaatgGTGCCAACGTGCACGCCTGTGTAAATAACGACATGCCCCCGTGCCCACAACACGTGGAGATGTGACTTCACTGTACCGGACTCTGAGCTGGATATCTGAAGGCATTTCTTATTAGAAACATCTCCCAGCATTGTTAAATTTGGGATAAGGGAAACAATTCACAGTTAACTTTAATGGAAGCttttttgggtttttttccAACCAATATCTCTTTTCAGAATAAGATGTATTaatgttggggggggggcactgttTTTGTagctttgctttttaatttttaatttccaaaCTCATGCTAACATGGGGATGGTAAAAACAAAGGGTGGGGTTTGATGCGAAGGGGGGCTCTTGACATGGTGGCATTAGCCCCTccctttatttataaaatcattattaatatttttgcagGGTGCGATCCTGactgaaattgctttattttttggggtgtgtttgaaattaacatttgtacATAAGTGATATTTGAGAAGGTATAATTTTTTAAGCCAAAaatttatatttcatgtttttagtgGACTAACTTAATgttttagctgtttatttttgcttgctCATTTTCTCTTTTCGTCTTTTTATTGTCTGTGATCCTGCCTTAATATTGGTTAATGAGatctaaacaaattaaatcctaAAATGAATAACGAACTTACTTGTACAGCTTTGCTCCATTAAAAAATTACCACCAGCTGCCCTGTATCGCCTACTCTTACAACTCGTCCTGAAACAAACCTGTGGGAAAGAAGAACGCTTTATCACTTCATCTTCAGAATGCAAACTGCTCTGCAAGACATTTAGACCGCGATGATGTACTGTGACTCGGCACTGCCAGTTAGCAGGCTTCTGTAAATCCAATTCAGTTACTATAATTGAAACAACTTGTTTTAAAAGGGGACAtgatttgaatattaaaaataaatacatctgggGGGGAAACTAAGAGAAATCCCTATAGCTGCAAACTGTATATGCCTTAGATATACAAACATCATATAGTTAGGTGCTTTAAGTATTGAAAGTGACATTTACCCATTTACCAATATCATTATCTCTGCAGCTCTCAGGCACTCTGCAGACATCAGTTGTGTAAATGCCTGAGATTTTAGGctagttcttttttttaagaaaacaactgTGAGCACTCAACCTGCATGTATAGGAATTATTATGGCATAGGTTATTAGGAAGCTGGTGGCTTTCTATTCTCTCACATTATATAGTGACAGGAATAAAATGAAGGCAGTATGAGCCGACACTCACACGTGCAGGTAAAAGATCACGTATGAAAGCTTTTGCTGGTTGAGATGCCCGTTTGGAATCGCTTTGTAACAACGATCCACCTGCGTTAGATTTGTCAAAGCAACAGCTGCAGCCATCAAAGGCTCGGGCCGTGGAGCAGCACTTCCCTGCCGATTTAATTGTTAACTTCAGCGTTAGAGCAGCTTCAAAATTCCATCTAAGTGCTGATTAAAGCAAAAGAAAGTCAGTACCTTGCAGTCCTCAGCACCAGGTATACAAAATGCTAATTAGTGCAGAATCAATGCTGAAGTTATGCAACAACTgaagttaatgaaaaatgttgattatagtgatattccattAATGCACACATCTGTCACCAGAGGATGCCTGTATTTACCCTTGTTGTGTGTGGACTTTTAAGCTTACAGTGACAAATTACATTCAGAACAATTTTCGATTAACAACATTTTACCAATAATTGGCTATGGTAAGCAGGGGGTAATGTAAACATACATACGAACCCATTGTTCCAGAGCCGCCCTTGATTGGCATGTTTTCCAATCCAACCCCCTACCACGATAGTACAGCCAAGAGGGAGTCAAGGGTTTGCTTTGGTCCGAAATGCATGTATACACCTAAATCGAGAGAAACCTAAAacatgagagtgtgtgtgtacatgcataTAGAACATGTATTCTGTAAAGTGCATATGTACATTTAGAAGGGGAGGCCATTTCCACCAACACACTTACCTGTGTTGCATGTATTGCTTGGAGAGCAATTAAAGGGATACTGTGCTTTGCTGAACTCTTTCCCAGCGATGTATAAATTAACCTATACaataattggaattgaattaaattgctGTTTGGCGTTTCGCCACTTCCCTACCTAATCGTTTCGGATTTTAAAGGGATTTCTGAAGGCAATTTCTTTAGTCTTGTGTAAATATTGCACATTGCACCAtgtaatggattttattttggggggggaggggttgccATACATTTATTGcataatagaataaaatatttttacccACG

Function

symbol description
arhgap26 Enables phospholipid binding activity. Predicted to be involved in regulation of small GTPase mediated signal transduction. Predicted to be located in cytosol. Implicated in juvenile myelomonocytic leukemia.

NR:

description
PREDICTED: rho GTPase-activating protein 26-like

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K20071 ARHGAP26, GRAF; Rho GTPase-activating protein 26

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011301 True 4928 mRNA 0.46 23 17312451 17342762

Neighbor

gene id symbol gene type direction distance location
AMCG00011299 kctd16,LOC106603861 coding downstream 108921 17173697 ~ 17203530 (-)
AMCG00011297 kctd16,LOC106603861 coding downstream 152865 17148015 ~ 17159586 (-)
AMCG00011294 NA coding downstream 307947 16978598 ~ 17004504 (-)
AMCG00011291 pou4f3,LOC106603866,LOC106567605 coding downstream 376609 16934506 ~ 16935842 (-)
AMCG00011292 kif3a coding downstream 392257 16910320 ~ 16920194 (-)
AMCG00011304 NA coding upstream 36964 17379726 ~ 17395987 (-)
AMCG00011303 NA coding upstream 91740 17434502 ~ 17452768 (-)
AMCG00011311 NA coding upstream 419148 17761910 ~ 17773165 (-)
AMCG00011315 LOC106604410,LOC107752029,LOC107743918,LOC107602558 coding upstream 441278 17784040 ~ 17785842 (-)
AMCG00011314 LOC107743918,LOC107752029,LOC107664328,LOC107568687,LOC107669111 coding upstream 444158 17786920 ~ 17793506 (-)
G105701 NA non-coding downstream 383 17309790 ~ 17312068 (-)
G105607 NA non-coding downstream 417377 16893960 ~ 16895074 (-)
G105553 NA non-coding downstream 587298 16655247 ~ 16725153 (-)
G105479 NA non-coding downstream 1065150 16244696 ~ 16247301 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 1074766 16236128 ~ 16237685 (-)
G105752 NA non-coding upstream 216640 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 221407 17564169 ~ 17566963 (-)
G105774 NA non-coding upstream 411565 17754327 ~ 17755758 (-)
G105782 NA non-coding upstream 454681 17797443 ~ 17800287 (-)
G105786 NA non-coding upstream 463917 17806679 ~ 17806929 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 351382 16943932 ~ 16961069 (-)
AMCG00011271 LOC107562913 other downstream 1214272 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 1338579 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 1796776 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 1939272 15370402 ~ 15373179 (-)
AMCG00011313 NA other upstream 374864 17717626 ~ 17751099 (-)
G105770 NA other upstream 408491 17751253 ~ 17751502 (-)
G105793 NA other upstream 656906 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 837884 18180646 ~ 18191195 (-)
G105890 NA other upstream 1759531 19102293 ~ 19105269 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000040_02650575_02692600 NA coding CI01000040 null 2649543 ~ 2692671 (+)