AMCG00011303


Basic Information

Item Value
gene id AMCG00011303
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17434502 ~ 17452768 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011303
AGTCTCAGCTGGGCCAGACCATGGGACTTGCATGTTTCAAATCCTGGAAATATAAGAATGTCACCCATCAAGATGGGAACCGAGATGTTCTTGTTAGCCCTGGCTCCTACTTCTTCATGTCCAACAGCAATGGGCAAGGGGAGGAATGGCTGAAAACACTCAACAAGGTGGTCTGGCTGCCATTCACAGCAAAGACACCAGGCGCATACTTCCATGCAGAAGGAGATGAAGAAACCAAGGCTAACAGAAATGGTCTATCTCCCCCCCATGCCCCCTCAAACCCCCACCCTTTGCCACCAGGTGTGTTTGGGCAGCGCCTGGAGGACACAGTGCAGTATGAGCGGCGCTATGGAGACAGGAAGGCCCCCCTGATTGTGGAGCAATGCGTCAGCTTCATTCAGACCCACGGGCTGCTGGAGGTGGGGCTGTTCCGGCAACCAGGCCAGGCCACCCTCGTTAAAGAGCTGCAGGACGCCTTCGACGCCGGAGAGAAGCCCTCCTTCGACAGCGGGACAGATGTGCACACGGTGGCCTCTCTCCTCAAGCTGTACCTGCGGGAGCTGCCAGAGCCCGTGGTGCCGTTCTCCAAGTACGAAGACTTCCTTCTGTGCGCCAAACTGCTGTATGGAAACAGAGACGAGGGTTTGTTGGATCTCAAGAAGCTCTTACAGGAGCTCCCCAACCCAAACTTTAACCTCTTGCATTACATATGCAGgtttttaaatgaagttCAGTCCTATTccaacataaacaaaatgagcaCCCAAAACCTGGCTACAGTGTTTGGCCCAAACATCCTGCGCCCGAAGGCTGAAGACCCTGAGACCATTATTGGAGGGACGGCCCTGGTACAGCAGCTGATGTCAGTACTGATCAGTGAGCACAGCAAACTATTCCTCAGAGAAGGGGAGGCTCGTGCCCAGGATTCCTTGCTTGAGACTCAAGGACAGCATGCAGACAAGGCAGACCCGGCTTCCCTTCACTCCTCCTACCTCGCTTCTGCCAGCGACACACCGTGCCTTCCCAGAGAACCACCGCTTGTTCCTGGAGGCTGTGTCCGCCAGCTCTCGTTGCCCCTCATTGCTGCCAGGAAAGGATTACCAAAGAATCTGACACAGGAGGACCGTTCTACCAGCTCTCAGTCACACATAACTACAGCAGGGCCCAGATGTCCCTCAGAGATGGAGACCCCAGTGTCTGAGGAGCCCTCCTCTGGGAGTTTAAGTGACCCAGTCTATGACAATTTCTGCCCAGGCTTGGCGTGTCAGGTGAGACTCGACTGTCACTCTGAAACAGCGACTAAAACGGGAGCGACTTCCCGTTCAGCAACCCCTCTCCCTGCTCCTAGGGCGACAGCAGCTCAGGATGGCTCTTTTCCAAATACTGTGAACCCACACAGCAGCTGGGGCGATGAAAGCCTCCGCACAGAGAGCTGGGCAGTGGGAGGACACCAAAGCAGTCCTGAGGAGGGACAGCAGAGCAAAACGTATGAGAGCACGCTGTCCGTGTACGACAATCTAGACAGCGAAGTGCTGCCAGCGAAGCCAGGAGACATGACCAGCGTGGACAGTGCCTCCTGGTCCTCCTGTGAGATTGTGCTGGAGGAGACGGCGGGGAGGTCCCAGTTCTCCTCCTACAGGACAGATCCCGAGGAGCCCCATGCATCTTCCTCGCTGCAGCTGGACTGCACTGTGTCCGAGAGGCACGGGAGTGGGAGCAGCGAGGTGTTCATGGCGCCTCAGGACACCGGCACGCCCCCCAGCTCTGCTGCCACACGCTACCTCCTTGCTGGACTGAAGCAGCAAATGGCCAAAGAGAAGGCAGAATATGAAGCCCAGATCAAAAGTCTGGAGCAGCGGAACGAGGAGCTGAAATGTGAGGTGAGCGGCCTGCGTGCCAACCTGGAGCAGCAGAGGCGCTGGTACAACGTGGTGGAGATCAAAATGAGGAACGCTGAGCGCGCCAGGGCGGACGCCGAGAGACGTAACGGCATGCTGCAGCGCGAGATGGAGGAGTTTTTCGACACATTTGGAGAGCTCACTAACGAGGTGAAGAAGACCAAGAGGATCGTTCAGAGCTTC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011303 True 2081 mRNA 0.56 8 17434502 17452768

Neighbor

gene id symbol gene type direction distance location
AMCG00011304 NA coding downstream 38515 17379726 ~ 17395987 (-)
AMCG00011301 arhgap26,LOC107713172,LOC107661718 coding downstream 91740 17312451 ~ 17342762 (-)
AMCG00011299 kctd16,LOC106603861 coding downstream 230972 17173697 ~ 17203530 (-)
AMCG00011297 kctd16,LOC106603861 coding downstream 274916 17148015 ~ 17159586 (-)
AMCG00011294 NA coding downstream 429998 16978598 ~ 17004504 (-)
AMCG00011311 NA coding upstream 309142 17761910 ~ 17773165 (-)
AMCG00011315 LOC106604410,LOC107752029,LOC107743918,LOC107602558 coding upstream 331272 17784040 ~ 17785842 (-)
AMCG00011314 LOC107743918,LOC107752029,LOC107664328,LOC107568687,LOC107669111 coding upstream 334152 17786920 ~ 17793506 (-)
AMCG00011318 med7,LOC107744582,LOC107669063,LOC107752091,LOC107664325,LOC107561400 coding upstream 743773 18196541 ~ 18197251 (-)
AMCG00011317 NA coding upstream 818644 18271412 ~ 18272204 (-)
G105701 NA non-coding downstream 122434 17309790 ~ 17312068 (-)
G105607 NA non-coding downstream 539428 16893960 ~ 16895074 (-)
G105553 NA non-coding downstream 709349 16655247 ~ 16725153 (-)
G105479 NA non-coding downstream 1187201 16244696 ~ 16247301 (-)
G105473 vdac1,LOC106567523,LOC107557296 non-coding downstream 1196817 16236128 ~ 16237685 (-)
G105752 NA non-coding upstream 106634 17559402 ~ 17561795 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding upstream 111401 17564169 ~ 17566963 (-)
G105774 NA non-coding upstream 301559 17754327 ~ 17755758 (-)
G105782 NA non-coding upstream 344675 17797443 ~ 17800287 (-)
G105786 NA non-coding upstream 353911 17806679 ~ 17806929 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 473433 16943932 ~ 16961069 (-)
AMCG00011271 LOC107562913 other downstream 1336323 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 1460630 15963338 ~ 15973872 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other downstream 1918827 15499534 ~ 15515675 (-)
G105290 LOC108429417 other downstream 2061323 15370402 ~ 15373179 (-)
AMCG00011313 NA other upstream 264858 17717626 ~ 17751099 (-)
G105770 NA other upstream 298485 17751253 ~ 17751502 (-)
G105793 NA other upstream 546900 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 727878 18180646 ~ 18191195 (-)
G105890 NA other upstream 1649525 19102293 ~ 19105269 (-)

Expression


Co-expression Network