AMCG00011306


Basic Information

Item Value
gene id AMCG00011306
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17752774 ~ 17755758 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011306
TTTGACCTGAAACTCTTTCCGTACAGACTGTTTCCAAGCAACCAGGTCGCCTCCAAGGCAACTGGAAATGCGCTGTGGAGCCGCGGACTGAGCAAAAGCCTGGGTACCTGTTGTCTGGGAGAGACATGGAAAAGGAGATGCCGCAGCTGCAGATGCCCCCCCCTCGGGTGTACGTGGAAAGGACTCTGGCGTTGATTAAACCAGATGTCATTCACAAAGCAGACGAAATTGAAGACATTATTCTACGAGCCGGCTTCAGTATTTTGCAGAAAAGAAAGTTACACCTCAGCCCTGAACAATGTAGtgacttttatgcagaccaatATGGCAAACTGTTTTTCCCAAGTTTAACTGCCTTCATGAGTTCTGGTCCGATCATTGCCTTGGTCCTGGCCAGAGAGCAGGCCATTGCTCATTGGAAAAGTCTCATTGGACCTGCAAATAGCACGAAAGCTAGAGAAACGCACCCAGAGAGTTTAAGAGCCATCTATGGGACATCTGACCTAAGGAATGCAGTCCATGGCAGTGAAAGCTTTtcaacagcagagagagaaatacagttCATGTTCCCTGGATCAATTATTGAGCCTATCCCATTGGGAAGTGCAGCCAAGGATTACCTTAGCAGATTTATAAACCCCACACTGCTAGCAGGGCTGACTGAACTCTGCAAAAGAAAGCCAGAAGATCCATTTACCTGGCTAGCTGATTGGCTGATAGACAATAACCCCAATAAGCCTAAAGTGCAACATGGAGTAGTGACTGAAGAGATTGAGTAAAGGAAGAGTTACACACCAATGGAGTATAATCTGATGTTAATGAAATGTCatgttagattttatttttgtataaagtTACTAAATACTAATACTCTTCTTTGTTTGCTACATTTAATGAACATGAAGGCTTGTCGGTAGGTTTACTTTGATAGTAGTGTtctgttttgtacatttatttaatatatcattattGATGAGTgattaaaagtgaaaatatgCAGTAAATACCTGCAATGCATATACATTACAACAAATCATATTCAAACCcttgtataaaaacagaagcatATACATTTGTTGGCTCTTCTGTTTGGGAGAAGTTACACCGATGTTGAGAAGGGTGTGTATTTCTATGTGGAGAATTGTGTGACTGTATTGAACGTGAAAACCGTGTAAACTGgggaattaatgttttttttgtttgtttcttttttgatttGCTTGATTTCTAAGCAGTGAATGAGAGTTAATTCTAACAGATGCTCAAGAACACTATAATTGTGCTTCAGTATTTATTGGGAATCTGTAGAATGTCCTGTAATGCATGGTTTAATagttgaaaaacataaaataaaagctaacCATATATCTCTTTATGTATATTAGCAATGTAGCAGAATCATGGTAGTGATGTGTCACATGTGCCTACCCATACATCTCTGGACTAAATGGAGAGGAACTTCTTGTTCTAATAAAGTTCTTACTGTAGAcatagcattttcatttttgtattatattaatgcTGACCTTTTTTCTAGCAACACTTGTATAATTggcttaatatata

Function

GO:

id name namespace
GO:0048515 spermatid differentiation biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K20790 NME5; nucleoside diphosphate kinase homolog 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011306 True 1566 mRNA 0.39 6 17752774 17755758

Neighbor

gene id symbol gene type direction distance location
AMCG00011310 gblp,LOC108268614,LOC107599381,LOC103033914,LOC108441034 coding upstream 2354 17745662 ~ 17750420 (+)
AMCG00011312 NA coding upstream 173058 17571125 ~ 17579716 (+)
AMCG00011308 LOC108441031 coding upstream 184546 17563585 ~ 17568228 (+)
AMCG00011307 rasgef1c,LOC102777120 coding upstream 196404 17544765 ~ 17556370 (+)
AMCG00011309 NA coding upstream 326276 17417595 ~ 17426498 (+)
AMCG00011305 hnrnpab,LOC103028658,LOC106611940 coding downstream 2068 17757826 ~ 17761783 (+)
AMCG00011324 gria1,LOC108427845 coding downstream 314643 18070401 ~ 18076037 (+)
AMCG00011320 gria2,LOC107575061,LOC108411138 coding downstream 336358 18092116 ~ 18098073 (+)
AMCG00011323 NA coding downstream 444883 18200641 ~ 18211863 (+)
AMCG00011321 cyfip2,LOC107561176,LOC107550751,LOC107752024,LOC107664348,LOC107744558 coding downstream 464288 18220046 ~ 18244145 (+)
G105769 NA non-coding upstream 1290 17751250 ~ 17751484 (+)
G105756 NA non-coding upstream 10387 17734990 ~ 17742387 (+)
G105715 NA non-coding upstream 373914 17378620 ~ 17378860 (+)
G105684 NA non-coding upstream 440706 17309759 ~ 17312068 (+)
G105538 NA non-coding upstream 1027621 16724688 ~ 16725153 (+)
G105776 phykpl,LOC100691570 non-coding downstream 10133 17765891 ~ 17768221 (+)
G105792 NA non-coding downstream 243878 17999636 ~ 18000343 (+)
G105794 NA non-coding downstream 276997 18032755 ~ 18033025 (+)
G105811 NA non-coding downstream 419597 18175355 ~ 18247768 (+)
G105858 LOC105030512,LOC106609167,LOC106569888 non-coding downstream 861092 18616850 ~ 18617065 (+)
AMCG00011293 plac8l1 other upstream 770533 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 1642393 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 1768695 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 1879285 15863032 ~ 15873489 (+)
AMCG00011252 NA other upstream 1896990 15853764 ~ 15855784 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 28405 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 1351515 19107273 ~ 19117369 (+)
G105916 NA other downstream 1466297 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 2339471 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 2540253 20296011 ~ 20339325 (+)

Expression


Co-expression Network