AMCG00011307 (rasgef1c,LOC102777120)


Basic Information

Item Value
gene id AMCG00011307
gene name rasgef1c,LOC102777120
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17544765 ~ 17556370 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011307
GGAGGCATGCCCCAGACTTTGAGCTCTACAAGTATGTTTACTCCCACTGGCTTCAGCCCACATCAGCTACCAGCTAAAGAGCCTGAGCAAGAAGCCCAGAGTCTTCAGGGCGGCGCCCTCACCTCTGCCTCTTTGGACGCTCTCATACAGCACCTGGTGCCCACCACTGAGTACTACCCTGAGAAAGCCTACATCTTCACCTTCTTGCTGAGTTCTCGCCTCTTCATCGAACCCCACGACCTCCTCTCCAGAGTGTGCCACATGTGCATCGAACAGCAACATCTGGACGATCCTGTGCTTGACAAAGCAAAAGTCCGCAAATTCGGGCCAAAGATCTTGCAGCTGCTAACGGAGTGGACAGAGACATTTCCCTCCGACTTCAGAGATGAACAGATGGTCGGGCACCTGAAAGACATGGTCCGCAGGATAGCTCCCTGTGATGAGGCGTACTGGAAGAAGTTGAATCAGCTCCTGCAGAACCTGAATCAAAAGCTGGCCACACTGAACCAGGGGGAGGAGAGCATCGTAAAGGTCAACGCTTCGGTCTCGGACAAGCTGGTGGCTTTCAAAACCAAACCTCCTCCCATTCAGAGGGACATTCTGAGCATCTGTAATGACCCGTACACCCTGGCACAGCAGCTCACACATGTGGAGTTGgaACGACTCAGTCACATAGGTCCAGAGGAATTTGTTCAGGCGTTTGTACACAAAGACCCTTTGGACACCACAAAGCCCTGTTTTACTGaacaaatgaaaaccagcaACCTGGAAGCCTATGTGAAATGGTTCAATAGGCTCTGCTATCTTGTAGCCACTGAAATCTGCATGCCAGCAAAGAAAAAGCAGCGAGCTCAGGTGATTGAGTTCTTTATCGACGTGGCTCGAGAGTGCTTTAACATCGGCAACTTCAACTCTCTCATGGCCATCATCTctgGTATGAATATGAGTCCGGTGTCACGGCTGAAGAAAACCTGGGGCAAAGTTAAAACTGCGAAATTCTTCATTCTCGAGCATCAAATGGACCCTACAGGTAACTTCTACAACTACAGGACTGCCCTACGAGGAGCAGCTCACAGGTCACAGACGGCAAATAGCAACAGAGAGAAGATTGTTATCCCGTTTTTCAGTTTGCTAATCAAAGACATCTACTTTCTCAACGAGGGTTGTGCAAACCGCTTACCTAATGGACATGTTAATTTTGAGaaATTCTTGGAACTGGCCAAACAGGTGGGAGAATTCATGACGTGGAAACAGGTGGAGTGTCCCTTCGAGCAGGACCGCAACATCCTGCACTACCTGCACACGGCTCCCATCTTCAACGAGGACGGGCTGTACCTGGCATCCTATGAAAGTGAAAGCCCAGAAAACCAGGTAGAAAAAGACAGGTGGAAATCTCTCAGatcCACAATCCTGGGGAAAACATGA

Function

symbol description
rasgef1c Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of catalytic activity and small GTPase mediated signal transduction.

NR:

description
PREDICTED: ras-GEF domain-containing family member 1C isoform X2

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011307 True 1425 mRNA 0.50 13 17544765 17556370

Neighbor

gene id symbol gene type direction distance location
AMCG00011309 NA coding upstream 118267 17417595 ~ 17426498 (+)
AMCG00011300 LOC105025958 coding upstream 236941 17295543 ~ 17307824 (+)
AMCG00011302 NA coding upstream 283548 17260015 ~ 17261217 (+)
AMCG00011298 yipf5,LOC107713174,LOC102777143 coding upstream 322246 17219688 ~ 17222519 (+)
AMCG00011296 NA coding upstream 525459 17009308 ~ 17019306 (+)
AMCG00011308 LOC108441031 coding downstream 7215 17563585 ~ 17568228 (+)
AMCG00011312 NA coding downstream 14755 17571125 ~ 17579716 (+)
AMCG00011310 gblp,LOC108268614,LOC107599381,LOC103033914,LOC108441034 coding downstream 189292 17745662 ~ 17750420 (+)
AMCG00011306 NA coding downstream 196404 17752774 ~ 17755758 (+)
AMCG00011305 hnrnpab,LOC103028658,LOC106611940 coding downstream 201456 17757826 ~ 17761783 (+)
G105715 NA non-coding upstream 165905 17378620 ~ 17378860 (+)
G105684 NA non-coding upstream 232697 17309759 ~ 17312068 (+)
G105538 NA non-coding upstream 819612 16724688 ~ 16725153 (+)
G105466 NA non-coding upstream 1344466 16200049 ~ 16200299 (+)
G105448 NA non-coding upstream 1411778 16132758 ~ 16132987 (+)
G105756 NA non-coding downstream 178620 17734990 ~ 17742387 (+)
G105769 NA non-coding downstream 194880 17751250 ~ 17751484 (+)
G105776 phykpl,LOC100691570 non-coding downstream 209521 17765891 ~ 17768221 (+)
G105792 NA non-coding downstream 443266 17999636 ~ 18000343 (+)
G105794 NA non-coding downstream 476385 18032755 ~ 18033025 (+)
AMCG00011293 plac8l1 other upstream 562524 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 1434384 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 1560686 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 1671276 15863032 ~ 15873489 (+)
AMCG00011252 NA other upstream 1688981 15853764 ~ 15855784 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 227793 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 1550903 19107273 ~ 19117369 (+)
G105916 NA other downstream 1665685 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 2538859 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 2739641 20296011 ~ 20339325 (+)

Expression


Co-expression Network