AMCG00011309


Basic Information

Item Value
gene id AMCG00011309
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17417595 ~ 17426498 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011309
gttTCGTTTCAAACTGAGGGCCTTTGGATCAAACACTACATCATGAGTGAAGGTGACAGTCAGTTCTACAGTGTCCAGGTTGGAGATTCAACTTTCACTGTTCTGAAGCGCTATCAGCAATTGAGAGCAATTGGCTCTGGGGCCCAAGGGATAGTCTGCTCTGCACATGACACGGTCTTGGGTAAACTGAGCCGTCCCTTCCAGAACCAGACCCACGCCAAGAGGGCCTATAGAGAACTTGTCCTACTGAAGTGTGTCAACCACAAAAATGTGAGGGCCGACCGCCTTATTCGAATGGCTTTCCTGAAAGAAATGTTCTTCTGCCTTAGTATTTTGACCAATCCAATGCTCCCATTGCACTGTATTCAGATTATTAGTTTACTAAATGTTTTCACACCACAGAAGTCGCTTGAAGAATTTCAGGATTTATACTTAGTTATGGAACTGATGGACGCAAGCTTGTGCCAGGTTATTCATATGGACCTAGACCATGAGAGGATGTCCTATCTTCTATACCAGATTCTGTGTGGCATTAGGCATCTTCATTCTGCTGGCATCATACACAGGGACCTGAAACCAAGCAACATAGTAGTCAAGTCAGATTGCACTTTGAAAATCCTCGACTTTGGACTGGCGAGAACAGCCTGTACTAACTTCATGATGACTCCATACGTTGTGACCAGATACTACAGAGCTCCGGAAGTTATCCTTGGAATGCAGTACAAGGAAAACGATATTGACCAGTGGAATAAAGTGATCGAGGTGCTGGGCACTCCTTCCCTGGAGTTCATGAACAGACTGATGGAAACAGTTCGTAATTATGTGATGAATAAACCACAGTATCCTGGAGTCAGCTTCCAGGAGCTCTTCCCAGACTGGGCCTTTCCTTCAGACTCTGAGCATGACAAACTGAAAAcgAGCCAAGCTAGGGATCTGTTATCCAAAATGTTGGTAATAGACCCAGAAAGGAGGATTTCTGTTCAAGAAGCCTTAAACCACCCCTACATACATGTGTGGTACGATCCTGCAGAAGCTGATGCTATTTCTGACAAGCAGCTGGAAGAGCGAGAGCACAGCATAGACCAATGGAAAGAACTAATCTACAAGGAAGTAATGGACTGGGAGGAGAGGAACAAGAATGGGGTAATGAAAGAAGAGTCTTCAGATGCCGCAGTGAACAGCAGCACCACGGCCTCGCAATCGTCCTCCATCAATGACATCTCCTCCATGTCCACAGAGCAAACGCTGGCCTCTGACACGGACAGCAGCAGCATCGATGCTCTCACCAGCACCTTGGAGGAGTGTCAGTGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K04440 JNK; mitogen-activated protein kinase 8/9/10 (c-Jun N-terminal kinase)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011309 True 1311 mRNA 0.46 11 17417595 17426498

Neighbor

gene id symbol gene type direction distance location
AMCG00011300 LOC105025958 coding upstream 109771 17295543 ~ 17307824 (+)
AMCG00011302 NA coding upstream 156378 17260015 ~ 17261217 (+)
AMCG00011298 yipf5,LOC107713174,LOC102777143 coding upstream 195076 17219688 ~ 17222519 (+)
AMCG00011296 NA coding upstream 398289 17009308 ~ 17019306 (+)
AMCG00011295 NA coding upstream 409309 17006454 ~ 17008286 (+)
AMCG00011307 rasgef1c,LOC102777120 coding downstream 118267 17544765 ~ 17556370 (+)
AMCG00011308 LOC108441031 coding downstream 137087 17563585 ~ 17568228 (+)
AMCG00011312 NA coding downstream 144627 17571125 ~ 17579716 (+)
AMCG00011310 gblp,LOC108268614,LOC107599381,LOC103033914,LOC108441034 coding downstream 319164 17745662 ~ 17750420 (+)
AMCG00011306 NA coding downstream 326276 17752774 ~ 17755758 (+)
G105715 NA non-coding upstream 38735 17378620 ~ 17378860 (+)
G105684 NA non-coding upstream 105527 17309759 ~ 17312068 (+)
G105538 NA non-coding upstream 692442 16724688 ~ 16725153 (+)
G105466 NA non-coding upstream 1217296 16200049 ~ 16200299 (+)
G105448 NA non-coding upstream 1284608 16132758 ~ 16132987 (+)
G105756 NA non-coding downstream 308492 17734990 ~ 17742387 (+)
G105769 NA non-coding downstream 324752 17751250 ~ 17751484 (+)
G105776 phykpl,LOC100691570 non-coding downstream 339393 17765891 ~ 17768221 (+)
G105792 NA non-coding downstream 573138 17999636 ~ 18000343 (+)
G105794 NA non-coding downstream 606257 18032755 ~ 18033025 (+)
AMCG00011293 plac8l1 other upstream 435354 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 1307214 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 1433516 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 1544106 15863032 ~ 15873489 (+)
AMCG00011252 NA other upstream 1561811 15853764 ~ 15855784 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other downstream 357665 17784163 ~ 17788050 (+)
AMCG00011328 NA other downstream 1680775 19107273 ~ 19117369 (+)
G105916 NA other downstream 1795557 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 2668731 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 2869513 20296011 ~ 20339325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location