AMCG00011315 (LOC106604410,LOC107752029,LOC107743918,LOC107602558)


Basic Information

Item Value
gene id AMCG00011315
gene name LOC106604410,LOC107752029,LOC107743918,LOC107602558
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 17784040 ~ 17785842 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011315
ATGACTGGACCTaaggcCTACCTCACCTACGCCAGCAGTGTGCAAGTGGGGGCTCAGAGCGGCATAGAGGAGTGCAAGCACCAGTTTGCGTGGGACCGGTGGAACTGCCCGGAGAGCGCCTTGCAGCTGTCCACCCACAACGGACTGAGAAGCGctaCCAGAGAAACCTCTTTTGTACATGCGATTAGCTCAGCTGGTGTGATGTACACTCTTACCAAAAACTGCAGTATGGGCGATTTGGATAATTGTGGATGTGACGATTCCAGGAATGGGAAACTTGggggcAGGTCGTGGATGTGGGGAGGATGCAGCGACAACGTGGATTTTGGGGAGCGAGTTTCAAAGCAGTACGTGGATGCGCTGGAGACCGGGCAGGACTCGAGGGCCGCTGTGAACCTGCACAATAACGAGGCTGGCAGACTGGCCGTCAAGGCGACGATGAAACGCATCTGTAGATGTCACGGCATGTCCGAGAGCTGCAGCGTCCAAACCTGCTGGCTCCAGCTGTCCGAGTTCAGAGACATCGGGAACTACCTGAAAGTGAAGCACGACCAAGCCCAGAAACTGGAGATGGACAAGAGGAGGATGCGAGCCGGCAACAGCGCCGACAACCGAGGGGCCATCGCGGAGGCTTTCAGCACCATCGCCCGGACAGAGCTCATCTACCTGGAAGAGTCCCCGGATTACTGCGCCAAGAACGCCAGCATGGGGCTGCACGGCACGGAGGCCAGGGAGTGTCTGCAAAGTGGCAAGAACCTCTCCCAGTGGGAGAAGCGCAGCTGCAGGAGGCTCTGCCATGAGTGCGGCCTGAAAGTGGAAGAGAGGAGGAGTGAAATCGTCAGCAGCTGCAACTGCAAATTCCACTGGTGTTGCACCGTGGAATGCGAGCAGTGCACACAGGTTGTCACCAAACACATTTGTGCCAAGAGAGATGGAGTACTTGGGCATTTTAACAACAGACGAAAACCCCGTGGGCATAAACGATAA

Function

NR:

description
PREDICTED: protein Wnt-8a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011315 True 987 mRNA 0.57 5 17784040 17785842

Neighbor

gene id symbol gene type direction distance location
AMCG00011311 NA coding downstream 10875 17761910 ~ 17773165 (-)
AMCG00011303 NA coding downstream 331272 17434502 ~ 17452768 (-)
AMCG00011304 NA coding downstream 388053 17379726 ~ 17395987 (-)
AMCG00011301 arhgap26,LOC107713172,LOC107661718 coding downstream 441278 17312451 ~ 17342762 (-)
AMCG00011299 kctd16,LOC106603861 coding downstream 580510 17173697 ~ 17203530 (-)
AMCG00011314 LOC107743918,LOC107752029,LOC107664328,LOC107568687,LOC107669111 coding upstream 1078 17786920 ~ 17793506 (-)
AMCG00011318 med7,LOC107744582,LOC107669063,LOC107752091,LOC107664325,LOC107561400 coding upstream 410699 18196541 ~ 18197251 (-)
AMCG00011317 NA coding upstream 485570 18271412 ~ 18272204 (-)
AMCG00011330 NA coding upstream 1330655 19116497 ~ 19121979 (-)
AMCG00011334 NA coding upstream 1414654 19200496 ~ 19208029 (-)
G105774 NA non-coding downstream 28282 17754327 ~ 17755758 (-)
G105761 LOC103029292,LOC108441031,LOC106604913,LOC108424167,LOC103354367 non-coding downstream 217077 17564169 ~ 17566963 (-)
G105752 NA non-coding downstream 222245 17559402 ~ 17561795 (-)
G105701 NA non-coding downstream 471972 17309790 ~ 17312068 (-)
G105607 NA non-coding downstream 888966 16893960 ~ 16895074 (-)
G105782 NA non-coding upstream 11601 17797443 ~ 17800287 (-)
G105786 NA non-coding upstream 20837 17806679 ~ 17806929 (-)
G105787 NA non-coding upstream 211596 17997438 ~ 17997725 (-)
G105795 NA non-coding upstream 246913 18032755 ~ 18033145 (-)
G105823 NA non-coding upstream 389826 18175668 ~ 18247770 (-)
G105770 NA other downstream 32538 17751253 ~ 17751502 (-)
AMCG00011313 NA other downstream 32941 17717626 ~ 17751099 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 822971 16943932 ~ 16961069 (-)
AMCG00011271 LOC107562913 other downstream 1685861 16043371 ~ 16098179 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other downstream 1810168 15963338 ~ 15973872 (-)
G105793 NA other upstream 213826 17999668 ~ 18000445 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other upstream 394804 18180646 ~ 18191195 (-)
G105890 NA other upstream 1316451 19102293 ~ 19105269 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other upstream 1624526 19410368 ~ 19413015 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 2079772 19865614 ~ 19867902 (-)

Expression


Co-expression Network