AMCG00011316 (LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679)


Basic Information

Item Value
gene id AMCG00011316
gene name LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18180646 ~ 18191195 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011316
ATGGACCTCCTGTCCTGCCCGCTGTGCCAGGCTGTGCTGTTCGAGCCGGTGACCGTGTCCTGCGGCCACTCCTTCTGCAAGAGATGCGTGGGGACGGGTCTGCCTTCCAAGTGCCACATATGCAAAGAGAGGTTAAAACTAAGGGACGTGAAACATGTCAGAAATAACGTTGTGCTGTTTAGTATCATTGAAAAATGCTACCCAGAAGAGACCAAACTGAAGTGCCATTTGCAGGACTTACTTAAAAACTGCGAGTTTACAGCAGCTCTACGGATTGCAGACGAAGGACTGGAACTGGCACCTAATGATGTCAGTCTGCGAATGTCAAGGGCAGAAGCCAACATGGGACTACAGTGCTTTACTGACGTACTGGAAGATCTGGATGTATTATGTAAAACACGGCCCACGTGGACTGAGgGTTACTTTCGAAAAGGGAATGTATTTGTGGAAATGGGACAAAAATCAGAGGCTTTGATTCAGTATCATCACTGTCTCCGACTACAATTGGAATGTGCTCCTGCCAAACAACAGATACAGAAGATACTGAACACAGATGGTGTCCCCATTCCTGAGGATATTGAAGACTTACTCAAAGTCGTCTCAATCCATATGAGAAACTCTAGCCCAGCAACAAGCTCTATGAACACTGTGAGTGAAAGCACTCATCTGGCCCAGCTCCTGGAAGTGGAGAGCAAGCAGCTTGCGGAAAGGAAACAAGTTCATGAAGCTGAGATAGCTGAGCTTTCAAAtttaacaaaGAATATTCCCATCTTTGTGTGTACGGTGGCCTACCCTGGAGTTCCTTGTCCTCTGCACATATTTGAACCCCGGTACCGGCTTATGATGCGCAGGTGTATGGAGATTGGCACAAAGAAGTTTGGCATGTGCACCTATGAACATGGCAAAGGGTTTGCAGACTATGGTTGTATTTTAGAGATCTTGGGTTTGGATCTCCTTCCTGATGGCAGATCCTACGTCGACACAGTAGGAGGGAGCCGCTTTCGAGTCCTCAAAAGAGGCCAGAGAGATGGCTACCATACAGCAGATATAGAGTACATTGAAGATCAAAAAGTGGAAGGAGCAGAGCTGGAGCTTGTACAGTGTATGCATGACAGCATTTACCAGCAAGCCCATGACTGGTACCACCGACTGAATGATAGAATCCAGGACCAGATCAGCAAGCAGTACGGCCCCATGCCCAACAGGGAGGATGATATTCAGGCTTCCCCCAATGGGCCTTCCTGGTGTTGGTGGCTGCTGTCAGTGCTGCAGCTGGACCCTGCCTACCAGACCACCGTGCTGTCCCTGACATCCCTCAAGGACAGGCTGGGGCACATTCGCATTGTTCTGGAGTACTTCTCACAGAGCTAA
>TU132382
TAGTCTAGCCTTATGTCACTGCATGTAATGTCCAGGTGCAGTCCAACTAAgtagttgatttatttttgttttgcaggtaATAACAGCAGAATACTCCATTTAAACCGTTTGCTAGCTACAGTTTCACTGGATCTCACTAACGGCGCCCGGAACGATGTGCTGGATTTGCTTTGGTGATTCACATTGCCCGTAGATGCCAcctatttcaaacaaaaaacacccgAAGTTTATGATTGACAGACAGCAGTGTGCATGAATGACCAAGGACTTGGGGTCTAGATCAGAAAATAAAGACCAAAGATAAACGGATATCTTGTTTTGGGGTTGACGAGGAACTTGAGCCTGGATGTCAATGCCTTTGTTTGAATCTTAACAAAGAAACAGTCTGGGCAGCTCCTACTGTACCACCTCCACCATGTAGATCAGTCTCGTCGCATTGGGACGGATGTAAGTGGTTTATGCTGAAATTGTAGTGACAAACTTGTTACCAGCAAATACATGTCGCTTTTTCTCTTCAGTCTGCGTCTGAAACCCGGAATTTGCACTTCTGCGTGAACCCGTCCCAGCTGTTTGCGGGAGCTGCAGCTCACTGAGCGGCATGGACCTCCTGTCCTGCCCGCTGTGCCAGGCTGTGCTGTTCGAGCCGGTGACCGTGTCCTGCGGCCACTCCTTCTGCAAGAGATGCGTGGGGACGGGTCTGCCTTCCAAGTGCCACATATGCAAAGAGAGGTTAAAACTAAGGGACGTGAAACATGTCAGAAATAACGTTGTGCTGTTTAGTATCATTGAAAAATGCTACCCAGAAGAGACCAAACTGAAGTGCCATTTGCAGGACTTACTTAAAAACTGCGAGTTTACAGCAGCTCTACGGATTGCAGACGAAGGACTGGAACTGGCACCTAATGATGTCAGTCTGCGAATGTCAAGGGCAGAAGCCAACATGGGACTACAGTGCTTTACTGACGTACTGGAAGATCTGGATGTATTATGTAAAACACGGCCCACGTGGACTGAGgGTTACTTTCGAAAAGGGAATGTATTTGTGGAAATGGGACAAAAATCAGAGGCTTTGATTCAGTATCATCACTGTCTCCGACTACAATTGGAATGTGCTCCTGCCAAACAACAGATACAGAAGATACTGAACACAGATGGTGTCCCCATTCCTGAGGATATTGAAGACTTACTCAAAGTCGTCTCAATCCATATGAGAAACTCTAGCCCAGCAACAAGCTCTATGAACACTGTGAGTGAAAGCACTCATCTGGCCCAGCTCCTGGAAGTGGAGAGCAAGCAGAATCCGTGTGAAATAAACCAAGCCAAGAAAGCTGATTGCTGCATCAGTCTGTGTCAGGCGGTCTCTTTTCTACCAGGAAGAGAAGCAGCAGATGATCAAATGATGAAAAACGAGGGTG
>TU132383
TAGTCTAGCCTTATGTCACTGCATGTAATGTCCAGGTGCAGTCCAACTAAgtagttgatttatttttgttttgcaggtaATAACAGCAGAATACTCCATTTAAACCGTTTGCTAGCTACAGTTTCACTGGATCTCACTAACGGCGCCCGGAACGATGTGCTGGATTTGCTTTGGTGATTCACATTGCCCGTAGATGCCAcctatttcaaacaaaaaacacccgAAGTTTATGATTGACAGACAGCAGTGTGCATGAATGACCAAGGACTTGGGGTCTAGATCAGAAAATAAAGACCAAAGATAAACGGATATCTTGTTTTGGGGTTGACGAGGAACTTGAGCCTGGATGTCAATGCCTTTGTTTGAATCTTAACAAAGAAACAGTCTGGGCAGCTCCTACTGTACCACCTCCACCATGTAGATCAGTCTCGTCGCATTGGGACGGATTCTGCGTCTGAAACCCGGAATTTGCACTTCTGCGTGAACCCGTCCCAGCTGTTTGCGGGAGCTGCAGCTCACTGAGCGGCATGGACCTCCTGTCCTGCCCGCTGTGCCAGGCTGTGCTGTTCGAGCCGGTGACCGTGTCCTGCGGCCACTCCTTCTGCAAGAGATGCGTGGGGACGGGTCTGCCTTCCAAGTGCCACATATGCAAAGAGAGGTTAAAACTAAGGGACGTGAAACATGTCAGAAATAACGTTGTGCTGTTTAGTATCATTGAAAAATGCTACCCAGAAGAGACCAAACTGAAGTGCCATTTGCAGGACTTACTTAAAAACTGCGAGTTTACAGCAGCTCTACGGATTGCAGACGAAGGACTGGAACTGGCACCTAATGATGTCAGTCTGCGAATGTCAAGGGCAGAAGCCAACATGGGACTACAGTGCTTTACTGACGTACTGGAAGATCTGGATGTATTATGTAAAACACGGCCCACGTGGACTGAGgGTTACTTTCGAAAAGGGAATGTATTTGTGGAAATGGGACAAAAATCAGAGGCTTTGATTCAGTATCATCACTGTCTCCGACTACAATTGGAATGTGCTCCTGCCAAACAACAGATACAGAAGATACTGAACACAGATGGTGTCCCCATTCCTGAGGATATTGAAGACTTACTCAAAGTCGTCTCAATCCATATGAGAAACTCTAGCCCAGCAACAAGCTCTATGAACACTGTGAGTGAAAGCACTCATCTGGCCCAGCTCCTGGAAGTGGAGAGCAAGCAGAATCCGTGTGAAATAAACCAAGCCAAGAAAGCTGATTGCTGCATCAGTCTGTGTCAGGCGGTCTCTTTTCTACCAGGAAGAGAAGCAGCAGATGATCAAATGATGAAAAACGAGGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011316 False 1371 mRNA 0.49 9 18180646 18190597
TU132382 True 1415 TUCP 0.46 5 18184484 18191195
TU132383 False 1344 TUCP 0.47 6 18184484 18191195

Neighbor

gene id symbol gene type direction distance location
AMCG00011314 LOC107743918,LOC107752029,LOC107664328,LOC107568687,LOC107669111 coding downstream 387140 17786920 ~ 17793506 (-)
AMCG00011315 LOC106604410,LOC107752029,LOC107743918,LOC107602558 coding downstream 394804 17784040 ~ 17785842 (-)
AMCG00011311 NA coding downstream 407481 17761910 ~ 17773165 (-)
AMCG00011303 NA coding downstream 727878 17434502 ~ 17452768 (-)
AMCG00011304 NA coding downstream 784659 17379726 ~ 17395987 (-)
AMCG00011318 med7,LOC107744582,LOC107669063,LOC107752091,LOC107664325,LOC107561400 coding upstream 5346 18196541 ~ 18197251 (-)
AMCG00011317 NA coding upstream 80217 18271412 ~ 18272204 (-)
AMCG00011330 NA coding upstream 925302 19116497 ~ 19121979 (-)
AMCG00011334 NA coding upstream 1009301 19200496 ~ 19208029 (-)
AMCG00011333 NA coding upstream 1018627 19209822 ~ 19217839 (-)
G105795 NA non-coding downstream 147501 18032755 ~ 18033145 (-)
G105787 NA non-coding downstream 182921 17997438 ~ 17997725 (-)
G105786 NA non-coding downstream 373717 17806679 ~ 17806929 (-)
G105782 NA non-coding downstream 380359 17797443 ~ 17800287 (-)
G105774 NA non-coding downstream 424888 17754327 ~ 17755758 (-)
G105840 NA non-coding upstream 49481 18240676 ~ 18244145 (-)
G105859 LOC105030512,LOC106609167,LOC106569888 non-coding upstream 425654 18616849 ~ 18617084 (-)
G105918 NA non-coding upstream 1042527 19233722 ~ 19244483 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding upstream 1185318 19376513 ~ 19376908 (-)
G105968 NA non-coding upstream 1205598 19396793 ~ 19480084 (-)
G105793 NA other downstream 180201 17999668 ~ 18000445 (-)
G105770 NA other downstream 429144 17751253 ~ 17751502 (-)
AMCG00011313 NA other downstream 429547 17717626 ~ 17751099 (-)
AMCG00011290 rbm27,LOC106567487 other downstream 1219577 16943932 ~ 16961069 (-)
AMCG00011271 LOC107562913 other downstream 2082467 16043371 ~ 16098179 (-)
G105890 NA other upstream 911098 19102293 ~ 19105269 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other upstream 1219173 19410368 ~ 19413015 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 1674419 19865614 ~ 19867902 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 4351454 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 4552235 22743430 ~ 22753616 (-)

Expression


Co-expression Network