AMCG00011330


Basic Information

Item Value
gene id AMCG00011330
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19116497 ~ 19121979 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011330
ATGGCAGACATCATAGCGATCAGCTCCGGCAGCGAGGAGGACTCGGACGTGGAGGTGCTCAGTATTTTGAGAGGCTCGGATGACGGTGAGAGGACCCCCGAGCTCCCCGCGGCACGCACTGCTCCGCCTTTGATCGATTTAACAGATTATTCCCATCCGTGGGCTTTTACAAAACGGAAAGGAGGAACTGTGGAACTGGTTGACCTGAGTGAGAGCAGTCCTGAGAAGTCCGATGCAGGACCACAGTGTTTGAAGGTGGAGGAGAGGAACGGGATCCTAGATGAGTTAACGAGCGAGAAGACAATGGAAGACCTCGACATTCCCTCGGTACGATCCCTCAGTGAACTTCTGGAGTCAGACATGTCCTCCCCTACTCTCCCTCAGTACAGCTTCCTGGACGAGTTGCCGTTTGATTTGCCGCACCCGGAGTGGTGTTCTGCTACCAGCATACAGTGGGAGGAGGAAAAGAAGGAGGAGATTGAGCATATAGGTGAGCACACCCCAAACTACTCCGGTGGCTCTGCATCTCTGGGCAGTCGTACCCCATGCTACTCCAGCGATGGAGACATGGCTGTGTTTTCAGATGATATGGAAGAAGGACAAGGGGAGGGCGCCTACCAACATAATGAGCCCTACCATACCAAACAACTATTTAACCCACAACCTGCTTATCACGAACCAGTCCTGGAAACAGTTTCTGCAGAGTCTTATGGAAGCCTGCAAATCGATGAGGGTCAACCTGAGAGGCCCTGCTCCGGAAGCAGTGATAGCATGTGGACATGCTTATATGAGCTCACCGGAAACAAGACGCCTTCTCCAAAGCAAGATGAGTTGCAGGAGAATGTAAAACAGGATTGTCCTGAATCAACCTTCCTCGCCAGTCCTCCTGCTGATGAGCAGAAAGTTGGAGAACCAAGTAGCCCGACCTCCACTGAGATTCTAGCTGGCGATTCCCCTGACTGGCTTCAGGAGGATGTGGACCTGACCTTGGATAGCCCCAGTAGTTTATTCGCCACTGATGGGATAGACCAGGTCTTTGACTCTTGTGGTAGCCATTCAAGTAGGAGTCCTCAGCCGAGCCCACAGCTGGAGGAAAGTAGGAGTGTCGAGCTGTCCGACACTGAGTCAGAACAGGGTGTGAGGGGTGTCAAGCGAAAAGAGCGCTGCTATGTTTCCCGAAGTGGGCTGAAAAAGTTGAAGCTGCTCACAGGATTGCCTGTCCAAGACCTCTATCCTGGGAGAATGGCAGGCGATGTTCAGGGAGAGGAGGAGGATTGTGATCTCAGTCAGTCTGAGGATGAGGAGGACTCTGGCAAGCCAGAGCCGATGTCTCTCCGGAGTCTGCGTCTTGTCCACACCACGATGGAGGAGAACTACCCTGAGGGCACCTTGCAGTTTCTGTTTGACTTCCTTCATCCCCGCTTTTACCCGCCTCGTGATATCGTCTCCCATGTTCTCCGAAACCTCCTGCTGGACTCAGACTGCCAAATCTTGGCGACTGAGGCCTACAACCTAATTATGAAGATCCAGCAGTTACATCCAGCTAAGctgagtacagtacagtgggACTGGGAGCTTCTAACATCTGTAATGGATGAAAAGGAACGTGTGAAAAAGCCAGTTCCCGCTGTTCTATGCATGTTTCTGACCTATGTAGTCCAAACCTTGGAGGATGACTTCCATAGGAGGTTGGCAATGCAGGAACTACACCGCTCCATCGCCAAGGCCACGCTCTCTTGCGATAGGAAGTTTCCACACGTCAGAGATGTGGTGAATTGGCTTATAACCGCTGTCATAAATGCCTCCAACGAGTCGGAGATCAAGGAACCGACCAATGAAGGGGATAAATGGAGGAAACGGGAAAGAGATGACAATCTAAAGATAGCGTTTCTTCTCCAGAAGATGCTGGCCCTGGCCATAGAGGTGGACCGCTCCCCGACCTGCAGCTCCAGTAAAGTCTCCCTTGAAATGTTCCACACACTCATTAGCATTGTTCCCCACCGACGCCACAGATTACTGCTGCTGAAGACCATGGAGAGCAAGTTACTGCAGTGCAAACTGGCTGAGCTGTTGCTGGACCATGCCTgcccacaaaaaacaaagatgccCATGTCCCTGAATCTCCTGCTTCACTTCTTCCAAAACACAACCCTCCCTTCAGATCCTACAGATGGCATTGCAGACCAGTGGCGACGGTGGAATGAACTTCTGCATCTGCTGTTCATGCTGTTCGTCAGCTATGGGGAGGTAACCGCTGGTAAGGAAGCTGACACTCTCTGGAAGGGTTTCTGCCTGGGCGTGTTGTCACTGGACTGCTGTGACCCTGTCGTGTGTCCTGTCCCCCCAGCTCACCTGAGATGCTCCGTCACTGAgcgcaccagcaccagcacacTGCCCATCGTCACAGAGCACGACAAGATCAGCCTGCGTGCCGTGCAGGATGCCACGCGGGGGTTTCACAGCCGAGTGTCCGACGCCCTGGGCGCGCCTATGAATTCACAACTGGAGGAGCGTACAGCTCTCTTCCAGTCTCTCTTAATGGAAGTCGTTTTTAAGGATAGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011330 True 2565 mRNA 0.53 9 19116497 19121979

Neighbor

gene id symbol gene type direction distance location
AMCG00011317 NA coding downstream 844293 18271412 ~ 18272204 (-)
AMCG00011318 med7,LOC107744582,LOC107669063,LOC107752091,LOC107664325,LOC107561400 coding downstream 919246 18196541 ~ 18197251 (-)
AMCG00011314 LOC107743918,LOC107752029,LOC107664328,LOC107568687,LOC107669111 coding downstream 1322991 17786920 ~ 17793506 (-)
AMCG00011315 LOC106604410,LOC107752029,LOC107743918,LOC107602558 coding downstream 1330655 17784040 ~ 17785842 (-)
AMCG00011311 NA coding downstream 1343332 17761910 ~ 17773165 (-)
AMCG00011334 NA coding upstream 78517 19200496 ~ 19208029 (-)
AMCG00011333 NA coding upstream 87843 19209822 ~ 19217839 (-)
AMCG00011332 NA coding upstream 125645 19247624 ~ 19261952 (-)
AMCG00011336 LOC107715168,LOC103027224,LOC108430945,LOC108274535,LOC103354395 coding upstream 174105 19296084 ~ 19307708 (-)
AMCG00011335 rbm22,LOC107685490 coding upstream 191848 19313827 ~ 19322039 (-)
G105859 LOC105030512,LOC106609167,LOC106569888 non-coding downstream 499413 18616849 ~ 18617084 (-)
G105823 NA non-coding downstream 868727 18175668 ~ 18247770 (-)
G105840 NA non-coding downstream 872352 18240676 ~ 18244145 (-)
G105795 NA non-coding downstream 1083352 18032755 ~ 18033145 (-)
G105787 NA non-coding downstream 1118772 17997438 ~ 17997725 (-)
G105918 NA non-coding upstream 111743 19233722 ~ 19244483 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding upstream 254534 19376513 ~ 19376908 (-)
G105968 NA non-coding upstream 274814 19396793 ~ 19480084 (-)
G106023 NA non-coding upstream 466196 19588175 ~ 19588972 (-)
G106163 NA non-coding upstream 819050 19941029 ~ 20014274 (-)
G105890 NA other downstream 11228 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 925302 18180646 ~ 18191195 (-)
G105793 NA other downstream 1116052 17999668 ~ 18000445 (-)
G105770 NA other downstream 1364995 17751253 ~ 17751502 (-)
AMCG00011313 NA other downstream 1365398 17717626 ~ 17751099 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other upstream 288389 19410368 ~ 19413015 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 743635 19865614 ~ 19867902 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 3420670 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 3621451 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 3931334 23053313 ~ 23060966 (-)

Expression


Co-expression Network