AMCG00011332


Basic Information

Item Value
gene id AMCG00011332
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19247624 ~ 19261952 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011332
GCGCGTTTACCAAGAAGAAGATCAAACTATAGACGTCCCTCCAGACATTTTAGCTCCAGTTATTATCCCTCCAGTCCAATGCTGAGACGTTGTGTTTACGCTGGGAAGAATGAGGATGATCACATTCCAGGAGTTGTCCAAGGGCCTCAGCTCCTTTGCCCCCAAAGCTTCTCTGCGACGCAAGCTTGGGAGATACAACACGTTCGTTATTAACCGTGCCCTGAATCGCGGCAAAacatTGGCAGCTTCTGATGGAGAGCTGAATATAACGGAGGGGGATGGGCGTGGCAGCAGTCACAGCCTGAACAGCAACACAAGCCTGCCCAGTGTCCAGAGTGGCTCTCACCGTGCTGAGCGCTCAGTTGCCTGTTGGGCAGTTTCATTTGAACGGCTCCTAGGGGACCCCATGGGAGTTCGCTATTTCACAGCTTTTCTGAAGTCAGAAGTCAGTGCGGAGAATATCCTATTTTATCAGGCTTGTGAAAAGTTCCGCCAGATTCCCCCCAAAAAGAAAGAGGAGTTGTTACGGGAGGCCAGGGTGATCTACGACACCTACCTGTCGAGCAATGCGTCCCACGCTATAAACATCGATGACACGGCCAGAGTGGAGGAGAGTGCTCTGCAGAGCCCCACGCCAGACATGTTCCAGAAAGCACAACAGCAGatttttaagCTGATGAAGTTTGACAGCTATACCCGCTTTGTGCGGTCCCAGCTCTACCAGAAGTGCATGGTGGCAAATGTGGAGGGACAGCCCCTGCCTGACCTGTGCCCTGGTTCGAAAAGCCCAGGTTCCAGGAAGAGTATGGTCAATGATGGTCCTTTTTTATCTGAGCCGAAGAAGaagaaaaagctTAAGCCTGAGAAATCCTTACCGTTTGATTTAGAGGACAGCATGGTGAGAAAGCGAGCTACATTGGATGGTCGGCTCAGTAAAGACAAGAAGGATAAACGGCGTGACAAAAGAGGATCGTGGGGAGCGGAAATGTCTGACCATCGCTCATTAGCAGTGAGTCGTCGCGAGTCCCAGTGCTCAGTCAGTTCGTCCACAAGTGTGGAGCTGGGGTCTTTCTGCAATCGAGAGAACGGGAGCTTGAGTCCTCGTGCTGCTGACCAGGACAAAGAAAGCCGGCCAGTGAAGTACTGCTGTGTGTACCTGCCTGATGGCACGGCCTCTCTGGCCCCGGCGCGCGCGGGCCTGACCATCCGAGACATGCTGGCGGGGATCTGTGAGAAGAGGGGCATCCTTTTGACAGATGTAAAAATTTACCTGCAGGGAAAAGACGACAAGCCGCTTTCTCTTGATCAGGACAGCTCTGTCCTCACAGACCAGCAAGTCCTTCTGGAGACATGGATTAAGTTTGCGTTGGAACTCGTGTTTCGAAGTAAAACTGTGGTAATTGCTGCGAAATCCAGCAAAACCCTTTCCGAAGCCCTTGCGTCTGTCCTGATCAGGAATGAGCTCAAGGCTGAGGAGGTGGTGGTCACTAAGagtGGGACACAGGAGCGGCTAAACATGAGCATGCCTGTGCTTTCCTTATCCAACAAGACCTTGCTTCTGGACAAAGTAAAAGGGCTGATTGATCTTCTCTCCAAAGTGCAGTGCTCCAGAGTAAATGACCAGCGGGGACTCCTCAGCAAAGAGAACCTGGAGATCCCTCACTTCCTGCAGCTGCCTCTCCAGGAGGAGGAAATCGAGGAGATGGAGGAAGAGAGTGCGTCGAGTGAGACTACGCACGGCTCTGAAGCCACCGTTCCCACACCCCAAGTAGAGGGCTGTAGGGAGGATATTGAGAAGCCTCCTGAAAGCACCACGGACTCGATTCCCCTGTCTCAGGATGAAACGGGCTCTGGGGAGCCTCTTACAGGACAAACTGATGCTTCAGCCCAAAGTGATATGGAATCCATCCCAATCAGTCCAGTAATTGAGAAGCCAGCACCCTCTGCTCAAACCAAAACACACTCCGGTCGTGAAACAACATTATGATTGGTTCTAGCAGCTCCAATGAATTTCTCCCTCCCAGGTGACGAGCCCATTTTGTATAGTAAGAGTCTTCAAAGCTGTGAGAGTTGACGCTCCcagcagtatgtgtgtgtacagaacTGAGAACTTACTGTTGCTCTTTCTAATTATTATCAGTGACACTGTCCTCTACACtggtggttcccaaccctggccctggaggagcccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011332 True 2193 mRNA 0.52 14 19247624 19261952

Neighbor

gene id symbol gene type direction distance location
AMCG00011333 NA coding downstream 29785 19209822 ~ 19217839 (-)
AMCG00011334 NA coding downstream 39595 19200496 ~ 19208029 (-)
AMCG00011330 NA coding downstream 125645 19116497 ~ 19121979 (-)
AMCG00011317 NA coding downstream 975420 18271412 ~ 18272204 (-)
AMCG00011318 med7,LOC107744582,LOC107669063,LOC107752091,LOC107664325,LOC107561400 coding downstream 1050373 18196541 ~ 18197251 (-)
AMCG00011336 LOC107715168,LOC103027224,LOC108430945,LOC108274535,LOC103354395 coding upstream 34132 19296084 ~ 19307708 (-)
AMCG00011335 rbm22,LOC107685490 coding upstream 51875 19313827 ~ 19322039 (-)
AMCG00011345 NA coding upstream 176271 19438223 ~ 19444151 (-)
AMCG00011349 NA coding upstream 237408 19499360 ~ 19513320 (-)
AMCG00011348 NA coding upstream 255479 19517431 ~ 19539640 (-)
G105918 NA non-coding downstream 3141 19233722 ~ 19244483 (-)
G105859 LOC105030512,LOC106609167,LOC106569888 non-coding downstream 630540 18616849 ~ 18617084 (-)
G105823 NA non-coding downstream 999854 18175668 ~ 18247770 (-)
G105840 NA non-coding downstream 1003479 18240676 ~ 18244145 (-)
G105795 NA non-coding downstream 1214479 18032755 ~ 18033145 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding upstream 114561 19376513 ~ 19376908 (-)
G105968 NA non-coding upstream 134841 19396793 ~ 19480084 (-)
G106023 NA non-coding upstream 326223 19588175 ~ 19588972 (-)
G106163 NA non-coding upstream 679077 19941029 ~ 20014274 (-)
G106183 NA non-coding upstream 809530 20071482 ~ 20115868 (-)
G105890 NA other downstream 142355 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 1056429 18180646 ~ 18191195 (-)
G105793 NA other downstream 1247179 17999668 ~ 18000445 (-)
G105770 NA other downstream 1496122 17751253 ~ 17751502 (-)
AMCG00011313 NA other downstream 1496525 17717626 ~ 17751099 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other upstream 148416 19410368 ~ 19413015 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 603662 19865614 ~ 19867902 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 3280697 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 3481478 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 3791361 23053313 ~ 23060966 (-)

Expression


Co-expression Network