AMCG00011335 (rbm22,LOC107685490)


Basic Information

Item Value
gene id AMCG00011335
gene name rbm22,LOC107685490
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19313827 ~ 19322039 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011335
TGCCGCGGTGGCTTCTGGGACACAGCAGGCTAGTTGGTTCTTTTCCGGTGCATGCTGGGACCTCAGTTTTCAAGATGGCGACGTCTCTGGGAGCTAATACTTACAATAGACAGAACTGGGAAGACGCgGATTTTCCCATTCTCTGTCAGACATGCCTGGGAGAAAATCCATACATTCGCATGaCCAAGGAGAAGTATGGCAAAGAATGCAAGATCTGTGCCAGGCCCTTTACAGTCTTCCGCTGGTGCCCAGGTGTGAGAATGCGCTTCAAGAAAACGGAAGTGTGTCAGACGTGTAGCAAGCTGAAAAATGTGTGCCAGACCTGTCTCTTGGATCTGGAGTATGGTTTGCCAATCCAGGTTCGTGACACTGGATTGTCAATCAAAGATGAAATGCCGAAATCCGATGTGAACAAAGAGTATTACACTCAGAACATGGAAAGAGAGATCCAGAGCACTGATGGGACAAGGGCAGTTGGACTGTTAGGCAAGGCTCCAAGCTCCAGTGATATGCTGCTGAAACTGGCCAGGACCACCCCTTACTACAAGCGTAACCGCCCTCACATCTGTTCCTTCTGGGTGAAGGGAGAGTGTAAGAGAGGAGAAGAATGTCCCTACAGGCACGAAAAACCGACAGACCCAGATGATCCCCTGGCTGACCAGAACATCAAGGATCGTTACTATGGGATAAACGATCCAGTGGCAGATAAGCTTTTGAAACGGGCCTCTACCATGCCCCGTCTCGACCCCCCTGAGGACAAGACTATCACCACACTGTATGTGGGGGGACTGGGAGATACGATCACAGAAACCGACCTCAGGCAGTCGGCTGAGCTGGCTGCTGAGAAATCCTTCAACAAGCTCATCATCAACGGCCGCAGACTCACAGTGAAGTGGGGCAGGTCTCAGGCGGCCCgagggaaggagaaggagaaggatgGAGTGAGTGAGACTGGGATGAAGCTCGAGCCGGTACCCGGCCTCCCAGGagTGCTGCCTCCTCCGCCTGTGTCAGAGGAAGAAGCCCCTGCCAATTACTTCAACCTGGCTCCCAGCACGTCCCCTGCAGTCATGAACATTGCCCTGCCTCCCCCGCCCGGCATCGCACCCCCGCCTCCCCCCGGTTTTGGACCTCCTATGTTCCACTCCATGGGCTCAATGGGtcctccccccccacctccgATGTCAATGAGGGCACCTGGTCACATCCACTACCCTTCCCAGGATCCCCAGCGCATGGGTGCCCATGCTAACTGCCATGGTGGTTCCTAATTGCtctgttctgtttgtgttttttgtgtctgtCTAGCTGACGGGCAACTCTATGTACCTTATGCAGCACAATTACTGATTTGTGGTAATTATTCAGATCCCCGTTTTAACAGTTtgtcaaataaatcaataatttgaCTTCAGCTCTTCGGCCGTAACATGAACCTTGTTTTAATGTGGTCATGGTAATGGACATCTAAGACTTATGTATTTGGTGCATGAAAATTCATGGCAAAATGACTGGATTCTAGATGCACATCTGTGTTCTACATTCCCTGTAGTTTTCCTGTAATACCACTTCCTTGTGGTGTTATGTACCGattgacacattttaatttgagcaGAAGACCATATCAGAATGTCACAGCTTTGGACCATGCTGAAATTGACACTTACTTTTTAAGTAATATAGATCccttatttaaaaccaaaaataaaacctaaaacacTTACTGTTATCCATGTTTCTGTAGTTCAAGTGAAATGGTTTGTATAATGATTGAAGTCCATGGGGAGAAGATTGTATGTTTCCCTTGGGCTGAAGTAATGGTGACACTTAATCAGTAAActgaaaacagtattttaatgtaaaccaTTGCTAAAGAGATGTCTAATTTTAAGTCGGGTATTAAACCAAGGTTAGACTAGAGATCTTGTTGTAAGGGCCTGATGTAAGTAACACAAAAGGCCCTAAGCCATTGCTCTGTACTGAAGAGCACAATTTGTGTTTATCTTGTGTCAGATCCATTTTTAATGTCTTATTGGCTGCTTAGGTTTGGGAAAATCAGACCAATACGTCACTGTGTAATGAGATATTGACCTTAATTATTGGCAATATTGTCCTCATCAggttagtttttattttcagcctTTAGTGTCTAAAAGGAAAACACCTCTATAcctatatttacaatatatttagatGGTTCAGGATCAATGTGATCTGAAGGTATTTTTTTACAGACCTAATGCAGTGTATATTTCTATgacttgttctttttttttttttttttttatcaaccaGCTATGGATACAAACAAGATActttatgcttttttatttttttttgttacattgtacAACTGGCAATTTCATGTAGTTTCTTCACttataacattaaaattagTTCCCATCTTCC

Function

symbol description
rbm22 Predicted to enable U6 snRNA binding activity and pre-mRNA binding activity. Acts upstream of or within chordate embryonic development. Located in nucleus. Orthologous to human RBM22 (RNA binding motif protein 22).

NR:

description
PREDICTED: pre-mRNA-splicing factor RBM22

GO:

id name namespace
GO:0033120 positive regulation of RNA splicing biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0009790 embryo development biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017069 snRNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
K12872 RBM22, SLT11; pre-mRNA-splicing factor RBM22/SLT11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011335 True 2409 mRNA 0.45 11 19313827 19322039

Neighbor

gene id symbol gene type direction distance location
AMCG00011336 LOC107715168,LOC103027224,LOC108430945,LOC108274535,LOC103354395 coding downstream 6119 19296084 ~ 19307708 (-)
AMCG00011332 NA coding downstream 51875 19247624 ~ 19261952 (-)
AMCG00011333 NA coding downstream 95988 19209822 ~ 19217839 (-)
AMCG00011334 NA coding downstream 105798 19200496 ~ 19208029 (-)
AMCG00011330 NA coding downstream 191848 19116497 ~ 19121979 (-)
AMCG00011345 NA coding upstream 116184 19438223 ~ 19444151 (-)
AMCG00011349 NA coding upstream 177321 19499360 ~ 19513320 (-)
AMCG00011348 NA coding upstream 195392 19517431 ~ 19539640 (-)
AMCG00011350 LOC105888595 coding upstream 228188 19550227 ~ 19570328 (-)
AMCG00011355 NA coding upstream 399115 19721154 ~ 19726365 (-)
G105918 NA non-coding downstream 69344 19233722 ~ 19244483 (-)
G105859 LOC105030512,LOC106609167,LOC106569888 non-coding downstream 696743 18616849 ~ 18617084 (-)
G105823 NA non-coding downstream 1066057 18175668 ~ 18247770 (-)
G105840 NA non-coding downstream 1069682 18240676 ~ 18244145 (-)
G105795 NA non-coding downstream 1280682 18032755 ~ 18033145 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding upstream 54474 19376513 ~ 19376908 (-)
G105968 NA non-coding upstream 74754 19396793 ~ 19480084 (-)
G106023 NA non-coding upstream 266136 19588175 ~ 19588972 (-)
G106163 NA non-coding upstream 618990 19941029 ~ 20014274 (-)
G106183 NA non-coding upstream 749443 20071482 ~ 20115868 (-)
G105890 NA other downstream 208558 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 1122632 18180646 ~ 18191195 (-)
G105793 NA other downstream 1313382 17999668 ~ 18000445 (-)
G105770 NA other downstream 1562325 17751253 ~ 17751502 (-)
AMCG00011313 NA other downstream 1562728 17717626 ~ 17751099 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other upstream 88329 19410368 ~ 19413015 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 543575 19865614 ~ 19867902 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 3220610 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 3421391 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 3731274 23053313 ~ 23060966 (-)

Expression


Co-expression Network