AMCG00011338


Basic Information

Item Value
gene id AMCG00011338
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19311307 ~ 19313365 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011338
ATGGTCTGTAAGTTTCTAAAGCCACATGAATGTGTTCCTTGCCTCTCAGAGCACTTGGACCTGGGAAAGAAGATCAGTACCCCTCAGGATGTGATGATGGAAGAGCTGGGCTTGCTCTCGAATAAGGGGTCCCGGATGTTCCACGAGAGACAGAAAAGGGTAGATAGATTCACCCTGGAAAACATCAGAGACAGGCCGATCATGgtgcagagcagcagcagcataaAAAACCAGGAGACCCCAGAGGGCGGTAAAGAAAATTTTCGCTCTGAGATTTTCATTCCTCAGCCTGGGAAAGAACATCTCCATCCaactttgaaaaaaacaacatttaaaagtacTGGGAGCCCAAATTTCATTGCCCCAGGTACAGGAGCTAAtgATCagatatataattttctttctttccaagGTTACGCTGGTCCACTGAAAGAAATCCCCCATGAGAAGTTTAACGTAACGGTCATCCCCAAATCGTACCGGTCCCCATGGCGGGACGCACCGGGTCAAAACGAGCTCCTTGCTACATTAAATATTCAGCTGCCAGAGCCCCCACAGAAGCCAGGCGCCACCACCTTCCGGTGCTTCAACAGAGCACCTATACCATTTGGAGGAACAGCTGGCAGTGAGAGGACATTCCCTTTACCTGGGTTCGAGCTCTCCCAAGCACAGACAGAACCCAGCCTGAGTTGGATGCGAATCAGTAACCGACCCAACTTCAATCGAGCACCTCGTGGCTGGGGAGTGAAGTACTCCCCCGAGTCTAATGAGCTGTGA

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011338 True 777 mRNA 0.50 4 19311307 19313365

Neighbor

gene id symbol gene type direction distance location
AMCG00011344 LOC101481134 coding upstream 22112 19286626 ~ 19289195 (+)
AMCG00011343 NA coding upstream 32051 19268970 ~ 19279256 (+)
AMCG00011331 LOC103390990,LOC105893714,LOC101160174,LOC104927068,LOC102798575 coding upstream 159578 19150482 ~ 19151729 (+)
AMCG00011329 LOC108431127,LOC107658040,LOC107707213 coding upstream 220873 19054134 ~ 19090434 (+)
AMCG00011327 si:dkey-34l15.2,LOC107707213 coding upstream 269106 19017222 ~ 19042201 (+)
AMCG00011340 ndst1,LOC108278613,LOC108431357 coding downstream 59082 19372447 ~ 19396764 (+)
AMCG00011337 rps14,RPS14,LOC100194652 coding downstream 97246 19410611 ~ 19414281 (+)
AMCG00011341 NA coding downstream 109094 19422459 ~ 19427557 (+)
AMCG00011342 NA coding downstream 120963 19434328 ~ 19438204 (+)
AMCG00011339 LOC107748112,LOC107588766,LOC107590070 coding downstream 137650 19451015 ~ 19475876 (+)
G105858 LOC105030512,LOC106609167,LOC106569888 non-coding upstream 694242 18616850 ~ 18617065 (+)
G105811 NA non-coding upstream 1063539 18175355 ~ 18247768 (+)
G105794 NA non-coding upstream 1278282 18032755 ~ 18033025 (+)
G105792 NA non-coding upstream 1310964 17999636 ~ 18000343 (+)
G105776 phykpl,LOC100691570 non-coding upstream 1543086 17765891 ~ 17768221 (+)
G106022 NA non-coding downstream 274828 19588193 ~ 19588973 (+)
G106071 NA non-coding downstream 489806 19803171 ~ 19803475 (+)
G106134 NA non-coding downstream 643640 19957005 ~ 19995987 (+)
G106138 NA non-coding downstream 664882 19978247 ~ 20014348 (+)
G106277 NA non-coding downstream 1302073 20615438 ~ 20615641 (+)
G105916 NA other upstream 88886 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 193938 19107273 ~ 19117369 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other upstream 1523257 17784163 ~ 17788050 (+)
AMCG00011293 plac8l1 other upstream 2329066 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 3200926 16105586 ~ 16110381 (+)
G106139 LOC108275110 other downstream 781864 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 982646 20296011 ~ 20339325 (+)
G106242 NA other downstream 1047843 20361208 ~ 20367223 (+)
G106613 NA other downstream 4027943 23341308 ~ 23341765 (+)
G106618 NA other downstream 4042697 23356062 ~ 23356559 (+)

Expression


Co-expression Network