AMCG00011348


Basic Information

Item Value
gene id AMCG00011348
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19517431 ~ 19539640 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011348
gAAATCCAAATTTTTGTGCTGATTTCTTCATCCTTGTGGCCTAAACAAGAAAGAAGAAGTTCTGATGGCAAGAAGCTGACAACTGAAAACTGAGTCATTAGTTTCCTTCATGCGCCTGAAGAGAAGAGGTGTGTGAGACTGAGGAGCCCGATTGTTACAACTTGAGCTCAACTTTGGGGACAGGATGCTGTGTCTGGTTCTGATCTTTGGGGTCCTGCTTTGTGCAGCCCAAGGTTTGGAACCACCATTAATTCAGCCAAACCAGACAGAAATTATCATTAACTCTGGGGCAATCCTACATCTTCACTGTTCTGGTGAAAAACCTGTGAACTGGATTGCAGCATTTGCAAAACATAAGAAGCTTATAAAAACTAGTGGAACCACCAGTGTATTCAAGGCAAAAGCTACAGTGGATTTTACAGGCAcctacaaatgtatatataaggACCAGCAAAACCTGTTTTCCTCAATACATGTTTATGTCAAAGATCCAGTAAAGCTATTCTTAGATGAAAAGTATGGGTACCATTTCTTGCGGAAGGAAGGAGAGGATATTACCTTGCCCTGTCTGCTGACCGATCCGAGTGCCACTGACTTCTCACTCAGAATGGAAAATGGTAGCTCTGTCCCTCGTGGGATGAACTACACTGTTGATCCAAAGAGAGGAATAACCATTCGAAACCTGCAACCCCGCTTTAATGCTGACTACGTTTGCCGGGCCAAAAAGGATGGAGAATTCAAATTCTCTATAGCTTTCAGCATCAATGTCGTGCAAAAGTTGCGTTCTCCACCTTATGTGTACCTGGACACAGACGAATATGTGCGCATTGTTGGTGAGACACTTGAAATCAGTTGTACTACGAACAACCcaaattttaattataatgtgacCTGGAAGCACTCTACAAGGGAGAGGTTACAAGCGTCGGAAGAGATTGGTTATGAGGGAAGTAAACTGGCTATAAGGAGTATTTTGAAAATTCCTGCGGTGAGCATGTCAGACACAGGGAATATAACTTGCGTAGGAGCAAATGAAGCTGGTACAAACAGTTCAACCACATACCTGCAAGTTGTAGATAAAGCCTACCTCAGGTTGTCAACCCCAATGGACACTGTCCTTGAAGTTCAAGAAGGACAAGACTTGGAGCTGAAGGTTTTAATTGAGGCCTACCCTGTCATTTTGCAGAAAGGATGGGTCACACCCAGGTCACATAATAATTCTGCTCACAAACAAGTGTTTCACAAATTCAACAACAGATACGAGGCCATTTTGTTATTGAGGAGAATGAAAGCTGAAGAGAGAGGACAGTACATCTTCTTTGCCaagaacacaaaagaaaatgcttcTGTTACGTTTCATATTCACTTTCACCAGAAGCCGACGGCTGAGGTGAAGTGGCACAACACCAACAACCTGAGCTGCAGGGCATTTGGGTACCCAGCTCCCAACATCCAGTGGCACCAGTGCTTAGGAATGAAATCCACGTGCAAAGAGAATGACACTGCTACTTTGGAGCATCTCCAAGCAGACACAACTGTTTCAAACCAAGAGCCCTATGGAGATGTTGAAGTGCTGAGCACAGTGAACGTGGGCCCCTTCTCTGAGAGGATGACCGTGGAGTGTGTGGCTTTTAACATCGCAGGGGAGGATCGGGTTTCACTGCAGACCGATGTTTTACAtacacctttcttcacaaagaCTCTTGTGGGATCATTGTGTGTGGCTGGCCTTTTCCTGGTGCTTCTGGTGATCCTGTTGTACAAGTACAAGCAGGTTCCACTTGTGATGAACCCGAAGGAGATACCTGGCCACTGGATATGGATGACTTGCTTAAATTCTCCTACCAAGTTGCTCAAGGGCTTTCTTTCCTTGCTGCCAAAAATgtACACAATCATGAAGATGTGTTGGAATTTGGAACCAACCGAGCGGCCAACTTTCGATAAAATAGGCCAACTCATTCAGAGACTACTGGGTGAGCAAACAGAGCAGATTTATAAAAACGTGGGGTACAGTGGAATGGAAGAAGAGGCGGAAACCTGCGATGCCCCTAAATGCCAAGAAGAGTCATGTGACCAGGGAGAGGATGTCCAGCCACTGATGAAAACTAATAACTACCAATTCTGCTGATAGCCATCTGACCATTTTTGCCTATTTTTATCTTATGCCTTTCATATAATGGTTCCAAGCTGCTCTCTTGAGAGTGCCCTTTCACAATAGATAAGCTTTCATTGACAATGTTGAAATCCATTACATTACTACAACAACTGGTGGATCGGTTAATTACAGTTCAGCTGGCAGACAGAGATAAAAGTACTGATGCGTCTCACTAGTTAGATTTCATTTTCGGTTCTAAATGACAAGGGTtcaatacagaaacaaacccgggttccttattttaaaatatcttcccCTGTCTTTTTTGAATTAACATCAAAACTGAAAGTGTCTCACCCTTTTCTTTATCCAATTGAAGAACAATCTTAAAATGGGTCTTCAGCCTGCCATACTGTATTCATTGTATTGTGTCATATCTAATGAACGGGCTCAGAAACTAGTGACCAAACTGGGCTTTCTCTGCTATGAAGGTGCTCCTTGTTAGATTGATGCAGCTATTTTATGTCAACCCTTTCAGCAGCTGAGAAAACATAAGGTAACTATTTTCAGTAAGCTAATGAACCAagtcagcattttattttcttggggGGGAAATGAAAGTCAGATTGCTTGTATTTTCAACAAGCACTGCAGTTTTTAGAACCCACTTTCCCAGGTAATTGCGCAGCTGAACAAAAACAGTACgtcttgtttatattttttcttttcatatgcggtcacatttattttcttaagagATGCCTAAATAAAgtcatttgtctttttgtttatgaaagtatgttttgatgttttaagGTTTCCAAATACAATCTTTCATTGGTATAACACAGGAGTAGAGGAAGTATACATACTTATATactcatattttaatatatattaaagacaTCATTGAACCCTCAGTCCATTTACTTAACctgaatgtttatatatatatatatatatatatatatataacttttaacTGATATAAACATGAAGCAAAAATCATCTGAGATTTATCAAAACATTCTAGTGACAAAATAATTGCAGAATACTTTGGCTTATGACATGCTATGAGTGTATTGCACTTAATATAGAATGGATAAAAGCATTTCACTACTTTAAGTTTctgattacttaaaataatgctTGTCAGCAGTGGCATGTGTTAGTCCTGATCCCAAGACTTATCTTCCTGCTGCCAGTCTTTTCAGACAGAATGTCAAGTGGAAAATAAGTGGCCtgtattatttatctgtattttccatatagaaaaaaaaataagcttgCCGGGGAAGCTTTGAACATTTATTGATCTAAAGAGTTTATATGAGTGAGTAATGTAATGCATGCcgtcatttaaaatgatttaaaacagtGATATATTTAAGGATACAGTACTTGTTGGTTGGTACAAGTATATTTTGGCTTATGACTCCATCTGGCTTATTTCTTACTGTCTCATTTAAAATCCTtcgaaaatgtaattttattagCAAAAGTTGCAAATAcctttgatgatgatgaaagACGAAATGGGCTAATCAGAACAAAATCACATAATATCTGAAGGTTGCTCTTTATATTATTGGaaatttatgtttatatatgtaaatgttttttttttaaatacatacattttcttcgcagttaaaattatttttaaagtcaatAATCTTTATACCAAGCTATTTCAGAGACCGTAACTTCCTTTTTATAACTgttgtacattatttattctgttttgtacttttcatggctgtgttttgtcattgaaataataatagtaataatattcataataataaaagtataccATATACTTGGCTTTATTAAgaacaattaatgtattttttccagtggaaaagaaaaaacaacatgaccacataattaaattgcaatttacaTTTGACAGTCATAATACCCTATTGGTCACAATTTAGAAAAAGCTTGGGTTAAGAAAGCTTTACTCATCAACCTTTTAGTCCacagaatgaaaacataaataaaacatgatttataatttacttgTTGCACTCATTTCAGAGAGTTGATCTGTATCACTACAGTctgcaaacaaatgcataacacatggaaaaaaacatctgcagctTATTTTCTTTCATCATTCACCATAAATCAAACAGCTTATGATAAATGTCTTACAATTTCAACATCATTCATCCTTCAGCAttagaattttattttacagatctTCCTCATGTAGCATTCAGCATATACTGCCAGATATATTTGATGAGAAGAGAAAAAGATTgtgtaaaataagataaaatagcATGGCTGTATGTTCATAACCAAGACAAGGAATGtgataaatgttaaatgtatttataaagttatctcagaatttaaacatttatcaatgttaattaaaatcctACAGAGAATTTTATTCACAGAATAACAGTTGCTTTAACTCCACACTCACAGTGTGAGTGATTATACAGGGCGTCTTTAACTATGTCTGCATGACATCAGAGAGAAGTTATGCAGAAGTTAATTTTTATTGTGTTAGCTTTTGTTATTCTTATCTTTACAATTGTTGATGTTTATGTTACTGTTATTGCACAGTGTATCTTTAACTatcattcaaatgcaaaacactGTGAAAATGTGGGATTTCCTTCTAATAGATTGTTGACTTACATGCACTGTTGAATGACAGGTTTTGATTGGGATATATATCTTTTACATTCAGCATGACCTTTTCAGggcatttaaatgaatgcttagttttgtgtttgtgtatgtaaaccattttaaccttttatatgtatatatgccaTTTTACTAATAAACTAGCTTTTGACGTGGATACAATATGTTATCTAagaatttatttgtattgatatacAGTCCATTATACAATTATTCTGTCCAGAATACAAACCCAAATATTTCTTTTATGAATTATATCTCAcataattaaatagttttgaCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011348 True 5059 mRNA 0.36 13 19517431 19539640

Neighbor

gene id symbol gene type direction distance location
AMCG00011349 NA coding downstream 4111 19499360 ~ 19513320 (-)
AMCG00011345 NA coding downstream 73280 19438223 ~ 19444151 (-)
AMCG00011335 rbm22,LOC107685490 coding downstream 195392 19313827 ~ 19322039 (-)
AMCG00011336 LOC107715168,LOC103027224,LOC108430945,LOC108274535,LOC103354395 coding downstream 209723 19296084 ~ 19307708 (-)
AMCG00011332 NA coding downstream 255479 19247624 ~ 19261952 (-)
AMCG00011350 LOC105888595 coding upstream 10587 19550227 ~ 19570328 (-)
AMCG00011355 NA coding upstream 181514 19721154 ~ 19726365 (-)
AMCG00011357 camk2a,LOC106563741,LOC106602935 coding upstream 190852 19730492 ~ 19759043 (-)
AMCG00011354 arsi,LOC106604849 coding upstream 277827 19817467 ~ 19824152 (-)
AMCG00011362 NA coding upstream 370302 19909942 ~ 19912905 (-)
G105968 NA non-coding downstream 37347 19396793 ~ 19480084 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding downstream 140523 19376513 ~ 19376908 (-)
G105918 NA non-coding downstream 272948 19233722 ~ 19244483 (-)
G105859 LOC105030512,LOC106609167,LOC106569888 non-coding downstream 900347 18616849 ~ 18617084 (-)
G105840 NA non-coding downstream 1273286 18240676 ~ 18244145 (-)
G106023 NA non-coding upstream 48535 19588175 ~ 19588972 (-)
G106163 NA non-coding upstream 401389 19941029 ~ 20014274 (-)
G106183 NA non-coding upstream 531842 20071482 ~ 20115868 (-)
G106212 NA non-coding upstream 677611 20217251 ~ 20217476 (-)
G106224 NA non-coding upstream 732423 20272063 ~ 20276305 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 104416 19410368 ~ 19413015 (-)
G105890 NA other downstream 412162 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 1326236 18180646 ~ 18191195 (-)
G105793 NA other downstream 1516986 17999668 ~ 18000445 (-)
G105770 NA other downstream 1765929 17751253 ~ 17751502 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 325974 19865614 ~ 19867902 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 3003009 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 3203790 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 3513673 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 3853464 23393104 ~ 23489642 (-)

Expression


Co-expression Network