AMCG00011350 (LOC105888595)


Basic Information

Item Value
gene id AMCG00011350
gene name LOC105888595
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19550227 ~ 19570328 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011350
ACAACATTAGAaattgcatgcatgtatgtatttgtcatCACTCGTCTACCTTTGTGGGAGATGTGTTGTAACAGACTGTGAATTTGCTTTGTAAGCACTCCTACAGCTGTGTCCAGGAAGCTTCGGACTTCACATTTCCCCCAACAACTCAGAGATCGTACTGCAGCCAAACTCCAGCACCTCCCTCACGTGTTCTGGGTTGAGTCCTGTATGGGATTACGAAGATATAAAGGATGTTCAAGTGCACAATGACAATTCTTCCAGTACCCTCATTCTGAGAAACATGTCGTGGAGACACACGGGATCATACACATGCTTTGAAGAAGGCATAGAAAACATAGAGAAAAGTATCTACATTTTTGTTCCAGATCCAGATGTGTGGTTTCTCCAGAGTGAAACATTAGTGATGAAGACACGGAAGGAAGGTGTAATTCCATGTTTGGTTACCAACCCTCAGATTAATGTCACCTTATATGAGAAGTCAACTGACATTCCTGTCAGTGGAAAATACAGTCCACAGGAAGGCTTTAGAGGGGATTTGCAGGATGCGACATACCTTTGCAAGGGAACTCTGAATGGCGAGGAAAGGGAATCACACTCATTTTATGTTTATAACCTTCAAGTAGTACCAGGAGAGTTTACTGTCCAAGTCAATGCCTCAAGGATGTTCTTAAAACAAGGTGACCCTCTCATTGTGAACTGTACAGTCAATGGAGTGGAGCTAGCTTATTTCACATGGGAATACCCAAGCAAAGATGTGGGTAAAATACTAGAACCAATAACAGATATCAGTTCTGAAGAGAAGTTGGAAATGCGATCCATCCTGAACATTACTAGTGTCACCCTTGAAGACGCAGGCCAGTATGTCTGCCGTGTCGTTGAACATATAGAGGAAAACAACGCTGTAGATAACATCACAATTACAGTGGTTGAGGTGGGTTTTGTGAAGCTGAATTCTTCCTTCAAAAGCACCTTGTCTAGTAAACTCCACGAAACCTTTGAGCTGACTGCGCAAATTGAAGCTTACCCCAGACCTCAGATACGGTGGCTGAAGGACAATGTCACCCTCGCAGCGGACCCAGAGGGGGTGTTTATTGAAACGACAAGGACGGACGAAATCAGCTACCTCAGTACTTTGACTTTGGTACGAATTAGAATGGAGCAACAAGGCCTTTACACAATTCAAGTTGCTAATGAAGACGATGCCAAGGAATTGTCCTTTGAATTTAATGTGAATGTGCCCCCTCAGATAGTGGAACTCTCCGACGACCAGCTAAAAGAGAAAGGACATGCAGTGGTGTGCGTGGCTGACGGTGTGCCTCCCCCCACAATTCAGTGGTACAGCTGTGATGATACAAACAAATGTTACAATAAAACTGCAGGGTGGAGACCTTTATCTAAGGACCCAAATAATATCAGCATACAGACCAACGACAGCTACAATGAGACTCGTGGAGTTTACCTCGTCAGGAGCATGGTCATCTTTCAGAAGCTGGAGAAGATCATTTCAGTTCGCTGCCAGGCCAGGAATGACTTTGGGTGGCAAGCGCGTGACATCAGATTGGTTTCACAACTAGCTACTCATGcGCTCAAATCCCAGAAACCACGCTATGAAATCCGCTGGAAGGTGATCGAGTCCGTCAGCTCAGATGGGCACGAGTACATCTATGTTGACCCCATGCACCTGCCTTATGATGCTGCCTGGGAGGTCCCTCGAGACTCCCTTGTTTTAGGTCCTATCTATCTCATAACAGAGTATTGTCGGTATGGAGACTTGGTTGACTACCTCCACAGAAATAAGCACACCTTCCTGCAGTACTATGCAGACAAAACCAGGAGAGATGCTGAGATGTGGTCAAGTAATACATCTGAAGGAGAAGGGAAAAGCTACGTGACTCTGACCTGTGATAGTGATGGGGGGTACATGGATATGAGCAAGGATGATACGGTGGAGTACGTCCCCATGCTGGAACTGACTGATAACATCAAGTATGCAGATATTGAGCCATCCGTATATGAAACGCCTTACCAGGAAGACAACTACCAAGGACAAGGTCCTGAGAGAACAGACACCACTCTGGTGATCAACGACTCCCCCCTTCTGAGCTACACAGACCTGGTGGGGATCAGCTATCAGGTGGCCAAGGGGATGGAGTTTCTGGCATCCAAAAATGTAGGAGGAACGCCATATCCTGATCTTCCCATGAATGATCTTTTCTACAATGCCCTGAAGCGGGGCTACAGAATGTCAAAACCTACTCATGCAGCCGATGAAATCTATGAGGTTATGCAAAAATGCTGGGATGAAAAATATGAGACGAGACCTGAGTTCTCATATTTGGTTCATACCTTGGGGAACATGTTGACTGACAGCTACAAAAAGAAATACATCCAGGTGAATGAAAGCTTCTTCAAGAGTGACCACCCTGCGGTTGTGCGCACAAAACCTCGAATCTCTGGGAGTCCGGTCTCTCTGTTGCACTCCGATCTGGAGGCGAGGCAGGATGCTGTAGGACAAGAAGCCCCAGCCTCCGATAATGAATACATCATCCCCATTCCCGACCCCAAACCAGAGGAAGATTTGGAAGAAAACGGAGACACTGAGGCCAGAAATACCACGAGCTCTCAGGACCCAAAAGAGATGGATGCAGTTTCTGTCTCTGCTGAGACATCAGTCACAGACCccgagaaaacaaacacaagttcATCCCAAGAAGAGGAAAAGACAGAGCCCGAGGTAGAAGACAGTTTCCTGTAACATGAAAACTTTTTTAGAAATAAGTGTGAAATAACTTCCAACAGTTAGATACAAGGCGGTATACCTGGTGTCAGATCTCATCACCTACTACATTGCACTTTTCAAACATCAAAAGACAGTTACAGAAGCTGATCTCATTTTTACCTCTAAAACCGACCATGTATgctattttatatgaaaatatcatttattttcattgtatttttctgccTGTTAATGTttcatctttgaaaatatttgaaaaaaaatatgcttttggAAAAATGGATGAAGTATGAAtgtatttgcagttttattttgccTGCTTAACCTGTTCAACAATATTTcagataaaaataattcaagtGTATAAGGACAGGCCACTACGTACAGCTACGGCTAAAAACTCATCAGATACATATTGTTAATATTCATTTACTAGATTATCCAGCAGTAACTATTCAGCCGATCATTAGCACTGCAAACCAACTGCTTATTGCATctatataattaaacatgtctaccataatatatattacaaaaactacaaacctaAGGGTATGAGATATTTTTATTacgtttttaatttgtatttgttgtagaTTTTCTGATGCTTTATGCAATCCCTGTCAAAATGACAATATGCAATGACATGGACATGATTTTCTCTTTCTAGTAACATCACCAAGGTACTGTGAGGTACAACACATTATTTGTAGTAgcattgacagattttatttttattattattgtttttgtctaGTATAAATGGGCTTACACTAACATAGTTTCAtcaatgaatatgtattttgcaaACAATTATCCTACTGCATTGCTGTGTCACTACCCAACAATCTTACATTACTATCATATTTTTAGGTCATAAACATAGTAACATAACTAGCATAAGATAAAGCTAAATATTAGTCAATTGCATagattttacatatatacatgttatattaacttttaaaacttacatttacctttttctataaaagggacattttttttattgtcaagttacatgaaaagaacaaaaaataaaggttcTAGAATTCAGAATTTGAACAACTGCATAATATGCACACTGAAGTctaatatgaagaaaaaacctaaatatgaaatactactaaaaagaaacaaactcttTGTAGCAAATTTGCACTTTAAAAATTCTTGCCAGAGGATTCTTGTGGAAAGAAAAACTTCATGATCAAATCTTCATCAGTGTTTAAACTATATttgatgtctgtgtgtatacatacacacacaatattttgcaatgagtatgtgtgtttttataatggATTTAAGATAGGTACTTAAAAAGTGATTAATCTGAAATCACTTCAAACTTCTACATTATACATTGTGTCCACGTTTAAGCCTTTGTTGagtcttttttgttgttctcaACTCGTCTTCCAAGGtacaacataatataaaatacacgaCTACAGGTGATAATctgcatgcattgttttttttttactcgcTGTTTAAAGAGGCTGCGGATTTCTCATCTCAACTCAACCGTAACCAGTACATCATGACCCTCACAAGATGATCGCTATGAAATCAATTTCCAATCAAAATTATAAATGCCATAATTGTTTTTCCAAATATATTGAAGAAGGCTTTATAGAGATCTATTGGCTCAACAGGCTATTTCTGTTTAAACTAACATATATTTGAGACATATATagaattaattttcttttcaatttcacagtttttcaGGGAACCTTTATACCATGTGCATTTCGTCAAGGATTGTACTGAGTTGTTGATATTTTAgactgtaaaatgttaaattattatggAATGTATCGACAAACTGATGACCAGTTGTTATGTTAATGACTAATTGTTGTTGTAATCATTTCTCAGCTCTGCATTCAATATGCACACATTCCATTTAATAAACCCATAATTGTGAAAGTCTTCCACAGATTGATGAGAATTTAGAATCAGGTTATGTCTGGCTCTGCTTACAGTTTCAAATAATAGCAGTATAACTGAGAATTATAGGTATATATTTGCTTAACtatgattgttttgtattttattttttggaaggggggtggtacatttttattttcttctttgattAACTGGGACATTGATCAGCCAATGTACACTTCACTTCTGTCAGGAATGGCTCAAGGAATATTTTTcaggaaatatttttaaatagctggagaaaatgtgaacaatACATGTCTTTATGCAGAACCAACTAACTACGCAAAACAAATGTGGTCTGTGACTCAAAATATTAATCATAGAGTCTAGAACAGCAACTCAAATTGATTGGACACTATTTTAAAAATTCAAGAGGAACTGAGGCGTCTCCTTCTTTCCCCGTTTACTCTCTGAACACCAGTGTATTACGAATATCTGTCTGTAAATGTAACTTCTCCAAACCTTTTCTCCAAAGTCGCATACCACAAACCACCAAAATCTCTTGAAAGtccataataaaacaatattccttaaaatgttttcattttttctgggATAATTTTGATCTCTCTTTTGCACTCATGTAAGAAGTACacctatacattaaaaaaggagaGTGTTTTTGTCTCTGTTACACTGTGTTGTTTCTTGATTTTACAATTAACCTTATCTGCTTTTTTAAGTGGGAAGTGAGAACTGGGATTAAAGTGAGATTAAAGGCTCTGAAGTCCTTGTTTATGActtcaaaatcattaattaGACTAAAATCCATCTGAgccattttcttaaaatgtttcactttttttaaacaatgattGTCTTCTCCAGGtacttttaatgtttgtttgttttttcatttaaactgaTGTAAAAAACCAGATACTCCATATAAAAACCATGTTCATACAGGCTGTGGTACCAAAGATGTATGTTTAGTGTGTGTATtcttatattttgcattgtacTGAGCTATAAAAGTTTGTATATTCCTGTTCAGGGCATActttataacaaataaaaatatatattagtatta

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: platelet-derived growth factor receptor beta-like, partial

GO: NA

KEGG:

id description
K05089 PDGFRB, CD140B; platelet-derived growth factor receptor beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011350 True 5741 mRNA 0.38 17 19550227 19570328

Neighbor

gene id symbol gene type direction distance location
AMCG00011348 NA coding downstream 10587 19517431 ~ 19539640 (-)
AMCG00011349 NA coding downstream 36907 19499360 ~ 19513320 (-)
AMCG00011345 NA coding downstream 106076 19438223 ~ 19444151 (-)
AMCG00011335 rbm22,LOC107685490 coding downstream 228188 19313827 ~ 19322039 (-)
AMCG00011336 LOC107715168,LOC103027224,LOC108430945,LOC108274535,LOC103354395 coding downstream 242519 19296084 ~ 19307708 (-)
AMCG00011355 NA coding upstream 150826 19721154 ~ 19726365 (-)
AMCG00011357 camk2a,LOC106563741,LOC106602935 coding upstream 160164 19730492 ~ 19759043 (-)
AMCG00011354 arsi,LOC106604849 coding upstream 247139 19817467 ~ 19824152 (-)
AMCG00011362 NA coding upstream 339614 19909942 ~ 19912905 (-)
AMCG00011366 diaph1 coding upstream 806614 20376942 ~ 20384649 (-)
G105968 NA non-coding downstream 70143 19396793 ~ 19480084 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding downstream 173319 19376513 ~ 19376908 (-)
G105918 NA non-coding downstream 305744 19233722 ~ 19244483 (-)
G105859 LOC105030512,LOC106609167,LOC106569888 non-coding downstream 933143 18616849 ~ 18617084 (-)
G105840 NA non-coding downstream 1306082 18240676 ~ 18244145 (-)
G106023 NA non-coding upstream 17847 19588175 ~ 19588972 (-)
G106163 NA non-coding upstream 370701 19941029 ~ 20014274 (-)
G106183 NA non-coding upstream 501154 20071482 ~ 20115868 (-)
G106212 NA non-coding upstream 646923 20217251 ~ 20217476 (-)
G106224 NA non-coding upstream 701735 20272063 ~ 20276305 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 137212 19410368 ~ 19413015 (-)
G105890 NA other downstream 444958 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 1359032 18180646 ~ 18191195 (-)
G105793 NA other downstream 1549782 17999668 ~ 18000445 (-)
G105770 NA other downstream 1798725 17751253 ~ 17751502 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other upstream 295286 19865614 ~ 19867902 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 2972321 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 3173102 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 3482985 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 3822776 23393104 ~ 23489642 (-)

Expression


Co-expression Network