AMCG00011356 (ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768)


Basic Information

Item Value
gene id AMCG00011356
gene name ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19865614 ~ 19867902 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011356
ATGGCTGCTGCAGCGGTGAGAAGCGTCGGGTCAAATCTCGCTAAAAACCTCAGGGAAGTCCGCTTACATTTGTGCCAGACGTCGGCGGCTAGCCAGGGGGTTAGGGATTTCATCGAGAAGCACTATGTGACGCTAAAAAAAGCCAACCCGGAGTTTCCAATCCTCATCAGAGAGTGCTCCGGGGTGCAGCCGAAATTATGGGCCCGATATGATtttgggagagagaggagtgtcGCTCTGGATAACATGAATGCTGACCAAGTGGCCAAAGCCCTGGAGACTGTTGTTAACTCAAAACCATGA
>TU132729
GCCAGCCGGAGATCGCCGTTGGTTTATAACCGTTCTGACCCAAAGCTAGTGGGCGGGATCATAGAGCTGCAGAATTAAAGGTGAACATCATGGCTGCTGCAGCGGTGAGAAGCGTCGGGTCAAATCTCGCTAAAAACCTCAGGGAAGTCCGCTTACATTTGTGCCAGACGTCGGCGGCTAGCCAGGGGGTTAGGGATTTCATCGAGAAGCACTATGTGACGCTAAAAAAAGCCAACCCGGAGTTTCCAATCCTCATCAGAGAGTGCTCCGGGGTGCAGCCGAAATTATGGGCCCGATATGATtttgggagagagaggagtgtcGCTCTGGATAACATGAATGCTGACCAAGTGGCCAAAGCCCTGGAGACTGTTGTTAACTCAAAACCATGAATATGTACCTCAGATCATTCAGGGGACCATCTTGGCTCAGCCCTATAATATGTGGACTTGGGGGAGTAGGGTGTAGGTGGGTTAAAGACAAAGCATCactgttcaaatgtaaaataaaaggtATTTAAATTGAAGTGAATGATCTTTATTTGTTCATgttctgtaaaacatttgtttcaggtacagttatttacatttttcacaaatggaaaacagataTTACTTAAATACCATACCCCTAAACACAGGGGAGGCGTGCAGAATACATGTGCCTCCCACCAATACAGTACAACACCCATTTTGTCAAGGTTTCAGCAAATATCAGTCCGGATGTAATGTGAAAAAGGCTATgcgtatatatttatacacaaaatgAGTGTAATCTTCCATGTTATACCCATTTCAACTTGACTAAATTAAATACTGTGGCTTTAATAACCGCTGAATAACATTGAAACACTTGCTTCTGTCCTTGGATGTTCCCATGTCACGTGATGGGATTcac

Function

symbol description
ndufa2 Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be part of mitochondrial respiratory chain complex I. Is expressed in several structures, including alar plate midbrain region; intestinal bulb; musculature system; optic tectum; and optic vesicle. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 13. Orthologous to human NDUFA2 (NADH:ubiquinone oxidoreductase subunit A2).

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006810 transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0070469 respirasome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011356 False 303 mRNA 0.52 3 19866119 19867813
TU132729 True 897 TUCP 0.43 3 19865614 19867902

Neighbor

gene id symbol gene type direction distance location
AMCG00011354 arsi,LOC106604849 coding downstream 41462 19817467 ~ 19824152 (-)
AMCG00011357 camk2a,LOC106563741,LOC106602935 coding downstream 106571 19730492 ~ 19759043 (-)
AMCG00011355 NA coding downstream 139249 19721154 ~ 19726365 (-)
AMCG00011350 LOC105888595 coding downstream 295286 19550227 ~ 19570328 (-)
AMCG00011348 NA coding downstream 325974 19517431 ~ 19539640 (-)
AMCG00011362 NA coding upstream 42040 19909942 ~ 19912905 (-)
AMCG00011366 diaph1 coding upstream 509040 20376942 ~ 20384649 (-)
AMCG00011367 NA coding upstream 518262 20386164 ~ 20390745 (-)
AMCG00011369 NA coding upstream 566556 20434458 ~ 20438919 (-)
AMCG00011368 NA coding upstream 572572 20440474 ~ 20477081 (-)
G106023 NA non-coding downstream 276642 19588175 ~ 19588972 (-)
G105968 NA non-coding downstream 385530 19396793 ~ 19480084 (-)
G105967 ndst1,LOC106611870,LOC107094997 non-coding downstream 488706 19376513 ~ 19376908 (-)
G105918 NA non-coding downstream 621131 19233722 ~ 19244483 (-)
G105859 LOC105030512,LOC106609167,LOC106569888 non-coding downstream 1248530 18616849 ~ 18617084 (-)
G106163 NA non-coding upstream 73127 19941029 ~ 20014274 (-)
G106183 NA non-coding upstream 203580 20071482 ~ 20115868 (-)
G106212 NA non-coding upstream 349349 20217251 ~ 20217476 (-)
G106224 NA non-coding upstream 404161 20272063 ~ 20276305 (-)
G106266 NA non-coding upstream 618369 20486271 ~ 20488188 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 452599 19410368 ~ 19413015 (-)
G105890 NA other downstream 760345 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 1674419 18180646 ~ 18191195 (-)
G105793 NA other downstream 1865169 17999668 ~ 18000445 (-)
G105770 NA other downstream 2114112 17751253 ~ 17751502 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 2674747 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 2875528 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 3185411 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 3525202 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 3945955 23813857 ~ 23817543 (-)

Expression


Co-expression Network