AMCG00011366 (diaph1)


Basic Information

Item Value
gene id AMCG00011366
gene name diaph1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20376942 ~ 20384649 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011366
CAAGCAGTGAAGGAGAACCAGAAGAGGAAGGAGGCAGAGGAGAAAATCCGCAAGGCTAAGCTGGCCAAGGAGAAGGccgagaaggagaaggaggaaaagCAAAAGAGGAACCAGCTTATTGACATCAACGCAGAGGGAGATGAGACTGGGATTATGGACGGCCTGCTGGAAGCTTTGCAGTCCGGTGCTGCCTTCAGGAGAAAGAGGGGTCCCAGACAAGCT

Function

symbol description
diaph1 Enables transmembrane transporter binding activity. Involved in several processes, including cellular response to histamine; protein localization to microtubule; and regulation of release of sequestered calcium ion into cytosol. Located in mitotic spindle. Implicated in autosomal dominant nonsyndromic deafness 1 and sensorineural hearing loss.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein diaphanous homolog 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011366 True 222 mRNA 0.54 2 20376942 20384649

Neighbor

gene id symbol gene type direction distance location
AMCG00011362 NA coding downstream 464037 19909942 ~ 19912905 (-)
AMCG00011354 arsi,LOC106604849 coding downstream 552790 19817467 ~ 19824152 (-)
AMCG00011357 camk2a,LOC106563741,LOC106602935 coding downstream 617899 19730492 ~ 19759043 (-)
AMCG00011355 NA coding downstream 650577 19721154 ~ 19726365 (-)
AMCG00011350 LOC105888595 coding downstream 806614 19550227 ~ 19570328 (-)
AMCG00011367 NA coding upstream 1515 20386164 ~ 20390745 (-)
AMCG00011369 NA coding upstream 49809 20434458 ~ 20438919 (-)
AMCG00011368 NA coding upstream 55825 20440474 ~ 20477081 (-)
AMCG00011370 trpc7,trpc7b,LOC107596405,LOC107654649,LOC108274464,LOC105903241,LOC103471336 coding upstream 114473 20499122 ~ 20544751 (-)
AMCG00011371 spock1,LOC106604788,LOC106611816 coding upstream 260854 20645503 ~ 20660607 (-)
G106224 NA non-coding downstream 100637 20272063 ~ 20276305 (-)
G106212 NA non-coding downstream 159466 20217251 ~ 20217476 (-)
G106183 NA non-coding downstream 261074 20071482 ~ 20115868 (-)
G106163 NA non-coding downstream 362668 19941029 ~ 20014274 (-)
G106023 NA non-coding downstream 787970 19588175 ~ 19588972 (-)
G106266 NA non-coding upstream 101622 20486271 ~ 20488188 (-)
G106278 NA non-coding upstream 230789 20615438 ~ 20615642 (-)
G106300 NA non-coding upstream 527270 20911919 ~ 20912138 (-)
G106340 NA non-coding upstream 567111 20951760 ~ 20952855 (-)
G106448 LOC106604502,LOC105008787 non-coding upstream 1410976 21795625 ~ 21799926 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 509040 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 963927 19410368 ~ 19413015 (-)
G105890 NA other downstream 1271673 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 2185747 18180646 ~ 18191195 (-)
G105793 NA other downstream 2376497 17999668 ~ 18000445 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 2158000 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 2358781 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 2668664 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 3008455 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 3429208 23813857 ~ 23817543 (-)

Expression


Co-expression Network