AMCG00011371 (spock1,LOC106604788,LOC106611816)


Basic Information

Item Value
gene id AMCG00011371
gene name spock1,LOC106604788,LOC106611816
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20645503 ~ 20660607 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011371
ATGACCTTACTTATAGCGTGCAATGACAGGGAGCTGAGAAGCCTTGCCTCCAGGCTAAAGGACTGGTTTGGAGCCCTTCACCAAGATGCCAACAGAGATCTTAAATCCACCGCATCTTCTGACACAGCACAAGGGCGGTTTGACACCAGCATCCTGCCCATATGCAAAGACTCCTTGGGATGGATGTTTAATAAGCTGGATATGAACTATGACCTGCTGCTGGACCACACTGAGCTGACTGCGATTTACCTGGACAAGTACGAGCAGTGCATGCAGCCGCTCTTCAACTCCTGCGACTCCTTCAAGGATGGAAAGCTGTCCAACAATGAATGGTGTTACTGCTTCCAGAAACCAGATGGCCTCCCATGTCAGAACGAAATTAATAGGATTCAAAACCAGAGCAGACGGAAGGCTCTTGTAGGAGCTTTTATTCCAAGATGCAATGACGAAGGCTACTTCAAGCCCACTCAGTGCCACGGCAGCACCGGgcagtgctggtgtgtggaCAAGTACGGCAACGAGATCGCCGGCTCCAGGAAGCAGGGCAACCCCACCTGTGAAGAGGACCAGGAGACCTCGGGGGACTTCGGCAGCGGGGGGGCTGTGATCCTGCTGGACGACCAGGAGGACGAGCGAGAGCAGGTGGGAGGGCGGCAGAAGGAGCGCAAGGTCAGGATCCACCCGCGAGGCGCCATCGAGGATGACGAGGATGAGGAGGACGACAAGGACGATGAGATCGGCTACGTCTGGTAGCTTCCCGGCAGCGCTCGAGGGACTCTCATTTATTGCACAGATCTGAAGCCATTCCACAGCTCCTCCTCTCACGTAACGGAAAAGCGAACGACGACGCAAACGCCAACCAACGACAACAGAATAATACGGACGCTCCCATTATTTGAGTTTGATTAGAACAGTAACACAACTGTGTCCTGCCTGTCCCCGCGCCCTGGGCTTCTCTTCTAGGTTTCCCGCAGCTACCCCCGAAATCCACTATTGTTTTATGGCAGATGCTTCTTTCTAAACCCATAGGCAGGTAGGCTCCTGGCAGAAATACTGTTGTATCACCACACAAACAAgttcataataatatttaacataACATTTACTCTTTTGTTACTGAAGTTTTACTCCAACATAGGCAGCAACTCATGTGATCAGAAATCTTGCTAAGTGAAGCTGCAGATATATCTTTTGGTATCATAAAAGTTTAGATTTTGGCATTCTTTTCAAAATAGTACCTACTCAGCATTTAAAcccatttcattttgcatttcctttgttttctgtgggCTTCTTCTGTGTCTTAAACTAAATACCATAGCAAAAATATAATGCTCAAATATTACTAATGTATGAAAGTCCTTATATGTAGAAAACAGCACTTTTTTAAAAGGATATTCACACAGTTGTTCCACAGGTCGAATACCTTGTTTTCCCTTTTAGGTTCGTACACTTTGCTGTACTGGCAAGGAAAATCTGCCGTGTCTCTGCTCTGAGACAGTCAAACCATTCATTTTATACTTTTTCAGAATGTGGAGATTTAATTTCCTGCCCGGAAGGTGGCAATTTCAGATCTTTCCAAATGTAttctatgaaaataaattaattcaataaactAGTACAGATCTTTCTGACTTTAAGGAAGACAAAGCTGCAAGGGGGCCAGTTTTGTCACTTTGTTTAAGGCATAAAAACGTCATTCGATCACAAATCAATCATCCAGCCTTCATTCTGATGACTCCCCTTAGTTGCGCAGCTGGAATTAATTGAGTTTTCCTTGTGGTTGAATTTATTATCAGTCTAAACTCTAAACAGTCTGCACCCTTCTGATAATAGACGTGCATCTTCAATAATATCGTTCATTCATCAGAAGCAGGCTTGCATTAAACTAGGAGTCCGGTTGTGCTTTGGTGTTCATTAGCTAGTGTTGTGACTTCTGtccaaaataatcaatttatcTTCTAGATTTGTCATCCATCGCTGCACTTGGGATCAAGCAGTTGCCAGAAATGAAAGGTTTAGAATCTCTGTTTAATGTCAGGGCATcataacagtttattttttttatacctgAACATTTCGATTTGAGATCAGAAATCCAGATCTCCCTAGCATGCGATTTAAGCCTTGTTAAGGATGCTTTTTGCTTTTCCTAACTAAACACCCCTGTCCAAAGCATTTGCCACCAATTACTCTTCCgtgaatacattataattagtATGATAAGTTATGTAGCTTTGTAAAGAGAATACATACAGGACTTTGTAGCATATATAAGTGGCTGAGCTTTGCTATTGACCCCAGACAAACTAGAGGAAGTGTAATGAATATAAAAGAAATGGAAGAGTGATGGGTAAttcaaagcaaattatttttccttctgtttcATTCATCCATTGCTGGATGTGATACACACCtgcactgctgtctgtgtgaTACACCAATAACAACACCTGTggagtttttcattttataattgatatctcgtttttgttttctgtagctttGTTATACCATGGCCCTCTTCCTCTCACAAGACTgagatgattttgttttgctatttcaTCTTCTACCAGTGCAAACATTAATATGGCCTTCCTGTACGTAACCCGTGCTCAATGAATGTATGATTATAAAGAGTGCCCAAGCCTGTAATCCTACGTATAGCCACTTTAGAGGCAATGTCAGCTGGCTGTTTAAGTCCGCTCTTTGTTGTCTGAAtgagaaatgctttttttaaagtataaaaaagGTGCACGAAAAAAGCAAAAGATCCTTTTAGTCACCCGatttaatgataaataaataaaattattcttACATTTGAAGGCTATCTTCTTTTGTGTGACCATGGAAGTCTTTGATGTTAAAAACGATCTTTTTGTATGTCCATTGTAGAAGTTGTGGCTGAACCAacttgatgttttgtttgtaactgTAGGTTTACACTTTGGCTTCTGTCTTGCtccattgttttacattatcCTGTATATAACAGTGAGGACATGAATTCCCAAATGTGaagcatttcatgttttcagatttataattatttagatttcttgttttattgtgtggttTGTTATTTTAGGGCGTTCttaagaataaattaattggATCTGGAAAGCGATGAGGGAAATGTGGTAGTCTTTACAAGACATGTGAAAGGAGATGTGTAATTTGAAAAACTAGGAGCATGACTTAATACTTTTTGTGCTTGCATATCTGTCTGTTCAACATGTTCGTAAACTATTtatgatattaaaaaacattgttttttaatatcataaatacaacatataaatatttgctttgtAAAACCACCGGCAGAGctaatgaatatttattaaatgtagtcaatcacaatgtttttgttttacaatggaATACTTCAAAAGATGAATAGTAAGATGTGTTTGGctaatagtaatagtaaaaaCTTTGGTGAATAAACAGTTGGGGAGGGAACAACAGTGTCTTACTGTACAGTTGTTTCATCAAAATGATTTCACTGACAGCTGTAATTCCACTGAGCAAAGATTCCCTTCAACAGCTTAAATGTGAACCAATTTGGTGTTGGTTCGCTATGGCAGCCTGCTTCCTGAATCTCTTGAACACAGTTTTGGTAGAAATGACTGAaatgacattttgtattcagtgcATGGGTGCGATTTCTCCCCAGCTCATATcctaattattaaattacaagtTGAGCAAACCTCACCCACTTGCCTCCAGCTAATGCAAAATATAGTGTGGTATCATGTCATTCAAATTGATTTTGCTGCTGTTCACGTGGCGGTGCATATAACTATACCCCAGTCAAACTCTGCTGACGTCAGTGCCTCCAACTGCAGCAAAATGATCAAATCTTTACCCAAAAAGGTGTTAAACTGGCAGCAGATGATCCCCCATATATATCTGATTTAATATTCTATAATCTAATCTTGGACAGAGAGGACAGTTACCAGTTGTTAGCAACTTGATTCTTGAAACAATGTTTAAAGGTCAAGTAATCTAGCACGATTTGGCACAAACCTACTCTGAAACAGAccctccatttcttaataataaccATAGAACCTGTATAAAAAATTGCAGAaacctttaatatttaaaaccttttaaacttttttgcAAGGATGTACCTCACTATTAGTCAGAAAAATTAAGAATCTAAAATCCTGACCTGTTAGATTACTCAGCAGGAAAGACTAACTCCATGATATACAGCATATCCTTCCCTTCCTGCCATGTACCCAATCCTAGCTGTGCTGGGCATTActttttgaatataaataagaCCTCTTTTAatcatcttttttgttattaagGTCTGAGGAAGTGTAAAAGAGGACATAATTGCTAGATATGCTTTACCTGTGGGCTGAAATAAGTTAAACAGTGCATTTCCCCATGCAATGGAACTGTAATCACAGTGGCTGTACtggaaaatgaaattaacatCTTAATAACAAGATGTGGGTTATTTCAGATGTTACTCTTATCCCTTTAAGCTGAATTCAACTTAATATTCTCACCTTGTGCTTCTGAAGTCTGGCTTCGCGTCATAGTCTAGCGTTGGGTGACATTCTTCttcaatattattcatattatttgattCCCCCTTCGTTTTAGGTTTCACATTGCTGACTCCTGACCCGCATTTGCAAGAATCATGCAATTGAGATCATGGTTGAGCAAATTTCTGTTAATATAGACTCTTACTTCGTACCCATAGTTTAGCTCTACTCAATAAGAGCTCAATATGGCAAGATGTGGATTGACAAGGTGTTCTTTCATAAGCTAAAATATTTGTGATTATGACTGCTGATTTGTGTGTAAAACattaagcaaaaaacaaactatgatGTTCTTTGGGGGCACAaactctttgtttttaatgtatctgAACTTTCCAATGCATCTACTGCACTAGAGCTAATTAGCTTTACTGGATATGTTTAGTCTTTTGATTTTCAGGTCTCTGGTAAGATAAGTCTGCCATCCTGGATAGGGCGTTGGTGTACTTTGTGTTAGTATAACCTTAAACCATCTCCTGTATAATAACTGGAAATACTAGGGGAACTTCCAATTCAGCAAATCATAAGGAAAGCCACTCTGACCTGTcgttgaaaaaatgtaaaagaaaaaacactgtagGGCAACTATTTGTTAAATTGTCAAGAGGAGATTCAACTCCCACAGAATACAAATCCACCAACAAATAACTGCTACTTCTATGTCTATTGAAGGTGACAAAACAGTAGAAAAATGCAAGGTATTTGTCTACCCAAATGcagcattttatatttactgaGGGAGAAcctggtgcattgtgggtaacaGCGAAAATTTTACTAAAGACTGGAGAGAGATTTGTAACACGAACAGTGAAATAACCCAACACCCAGAAGCTGCCCAGATCTTTTAAACTGAACACTGAACCAAACTGTGCATGGTGGTAACAGTTCTTTGTTATTGAAGTGTGAAGGTCCATTACTTGcaactttgtttgtttgtctgtctgtctgcgttcattttttttttatttcaggtttctttttgttccaggaagaaaaacataatgaCAAACCCGACAAActtttcaaatcaaatgcagAGCCATGCTCATTTTTTCACGCGTTTTGATTTTGACGTCAGTACGGTTAtttttgagaaatgtgtgtaGTACATTCGGTATGTGTTATAGTTTACCATAGTAGGATTTCTTCCTTCTGCTGTTGTTTGCAATATGTTCATTGGATATCAATCATGCAGTGCTTGTAAATCACCACAGCAAACCTGTAGAAGGGTGGCACTGCACTCTGACCGCTCAACACACATATCCCATGTATAAGACGTGGTTACTCAGTTGGATGCctttttgttactgttttccTCCCAATTTTTAATCTATTGAATATTGTTATAAAAGTCTTCAATGCACAATAACATAAATGGCCATATTTGCAGACGtcttatttgttaattttatattttttactttgtaaagaaaacaaaatgtaatataatgccATCTATGGCTCTGTGGCTGtgattatttgcatttaaacagtGTATAAGTTGATAGTCTTCAGTGTAGCTAGGTCTgtagctatttaaaaataatgtgtagtGAGTTCTGAATGTCTTTCCTTCTGGTTTTAAAATGgaatgttgatgttttttggCTGAATTTCTGATTTCAATGTAACTGTTCCATTTTGTCTGTCTGAATAAATTTTAGTCTGTCCATTA

Function

symbol description
spock1 Predicted to enable calcium ion binding activity. Predicted to be located in extracellular region. Orthologous to human SPOCK1 (SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1).

NR:

description
PREDICTED: testican-1 isoform X2

GO: NA

KEGG:

id description
K08136 SPOCK; testican

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011371 True 6261 mRNA 0.38 6 20645503 20660607

Neighbor

gene id symbol gene type direction distance location
AMCG00011370 trpc7,trpc7b,LOC107596405,LOC107654649,LOC108274464,LOC105903241,LOC103471336 coding downstream 100752 20499122 ~ 20544751 (-)
AMCG00011368 NA coding downstream 168422 20440474 ~ 20477081 (-)
AMCG00011369 NA coding downstream 206584 20434458 ~ 20438919 (-)
AMCG00011367 NA coding downstream 254758 20386164 ~ 20390745 (-)
AMCG00011366 diaph1 coding downstream 260854 20376942 ~ 20384649 (-)
AMCG00011372 NA coding upstream 53331 20713938 ~ 20728141 (-)
AMCG00011375 NA coding upstream 231983 20892590 ~ 20907111 (-)
AMCG00011376 NA coding upstream 298257 20958864 ~ 20966129 (-)
AMCG00011379 NA coding upstream 316076 20976683 ~ 20977159 (-)
AMCG00011378 NA coding upstream 320802 20981409 ~ 20989043 (-)
G106278 NA non-coding downstream 29861 20615438 ~ 20615642 (-)
G106266 NA non-coding downstream 157315 20486271 ~ 20488188 (-)
G106224 NA non-coding downstream 369198 20272063 ~ 20276305 (-)
G106212 NA non-coding downstream 428027 20217251 ~ 20217476 (-)
G106183 NA non-coding downstream 529635 20071482 ~ 20115868 (-)
G106300 NA non-coding upstream 251312 20911919 ~ 20912138 (-)
G106340 NA non-coding upstream 291153 20951760 ~ 20952855 (-)
G106448 LOC106604502,LOC105008787 non-coding upstream 1135018 21795625 ~ 21799926 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding upstream 1214205 21874812 ~ 21875126 (-)
G106454 NA non-coding upstream 1266246 21926853 ~ 21928367 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 777601 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 1232488 19410368 ~ 19413015 (-)
G105890 NA other downstream 1540234 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 2454308 18180646 ~ 18191195 (-)
G105793 NA other downstream 2645058 17999668 ~ 18000445 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 1882042 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 2082823 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 2392706 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 2732497 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 3153250 23813857 ~ 23817543 (-)

Expression


Co-expression Network