AMCG00011374


Basic Information

Item Value
gene id AMCG00011374
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20954794 ~ 20958447 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011374
gCCAGTGCCACAAACCTCGCCTTTTCCCATCGCTGCTCTCAATACGGAGTTTGTCGTGATTTATAATAGTGTGCACTATCACCCACCTCACTAAACGCAGGCAGCCAACcatgtgcaaataaataagcattaaGTGCTTTGCTTACGGTGGTGGATTGGCCATCTGCCCCTGACAAGGTAACTAGAAATACGAGTCTGGAGCAGCTGGGTCTGACACCtgagtgtaaaacaaaaaactaaaacgtaTTGCATGTTTATCAGACCTTCCCCAGCTCAGCAGCGCAATGCATACACGCAAAAAGCAACGCAAGTCACCTAACCAGCTTTTAATTACCCTCGAAGTGAACCCGTGTCTCTGACGACCATTTCAATTATTCTAAGGTGCCCGTGTGGAAGATGTGGCAGTCCACAGTCTCGCTCCCGCTGCTGTCCGTGCTCGTCCTCGTGGCAGTGCGATACTGGCATCACCTGGGAGGGTTTTGCCGAAGCGTGTTCTCTGGCGGGGCAGGGAAGGGCTCTGGGAGGCGGGGGGCTGTTCAGCTCACTCACAGCTTTGTCCTCATGAATTCTACCCACGGGCAGCCCGACAGCGTCCTGCAAACCTTCGACCTGTACGCCCAGACACAGCCTTCCCTCAGCATCGGCAAAGAGAAAGGTGAGTTTGTGGACTGTGTGGTGCACAGGGTAGCTCCCACATGTGCTCTAGAGCTGGGGACCCACTGCGGATACACAGCCATTCGGATCCTGAGACGGCTGCCCTCCTCCGCCAAGCTGTACACGGTGGAGCAGGACCCGGCCACCGCAGAAGCCGGGGAGGAGATGATTCTAGTGGCTGGATTCAAGCATTCCCAGTTCCAGATGTTGATCTCGCCATCCTCTGCTGCTATTCCCAGGATGAGGGCAGAGCTGGGTGTGAGAGCGGTGGGGCTGGTGCTGATGGACCACGACGTGGAGCAGTACCTGCCCGACCTGCAGGCACTGGAACAGGAAGGCCTAGTCTCGACCGGCTCTGTCCTGCTGGTCAATAACACGCATGCCCAGGGAGCGCGGGACTTCCTGCGCTATATCCACAGCAACCCACGCTACTCTGTGCACAGCCAGAGACATGGCATGCTGGAGGTCCAGTGCCAACAGGGTTCAATCGATGGCACGAGGTAAGAACATGATGCTCCTGTGAGGAGTCTACCAGACTGTACCTTGACAAAAGTTGAGCAGATACTGGATAGTTGCTAGCCAATCATTTCAAAACAGAACCTCAAAATGTATGGAAACTTACTATGTTATAATGTTGGTACTGTTAATCAGTAAACGTATACCTTTAAATTGGTCACATAACTAATTGTTTGTAGTAATGAATGTGAGTTTCACAAGTATTCTTACTAATGGTAGAGGCAAGTGCAATTCCCCCAATTTACCACATGTAGGCATTAATAGAACATATGTTAAtggacaaaaacacattaaaacaaattggcaagtttttatttggtaaaaAGGACACCaattgattaatatatacacagtgcaCTGAATATGTGACACAATAGACCACAACTCACCTACCGTTtcaaatagaatacattttatattcgTCAATCAACAACTTTAACAGTTGATGGCTTTGTCCCGGACACGTCAAGAACTTAGTGGTtggttttttacattttcttgaacTTTATCATTTATCATTGTTAGAATGATTTAAgattaatataatcaaattgCAGATGATAATCTCTGAGTCAGATGTAAAGGGGCCactgaaaaatattgtaataatctTTCAGGGATGCAAGGTAATGGCAGTCTCTATGGAGTCAAAATCATCATTCATGGGTAGATTAATTGAATTGTTAAatccaatttagttttttaacattttcaatcagAAGTTGTTCAAACCTGTTGACAAATCTAAGCATTTACTGTTGCAACTGAAaatatgcttgtgtgtgtatagcagatatgtacatttgtttggtttgttttcaaacagcaccatttccttttttgttggaaatatacaaacaattctttataaataaatgtgaagagTTAAACTGTTGTTGTACCACATCTTTTCGTAGACCGTATGCAGCTCAAAACTCAAACCTGCAGTTTACTTGCCTTGTTAGTTGTCTGGTGTTACTGTGTTTACAATCCAGAAAGCACCCCCCCATGTCTGATATTTCAGAGACACTGTAGCATGATAACAAGGTCAGCCCATGTGAAGCATGGAGAAGAAACAGTGAGAAACCCtgcatcattttatttctggtaAATCAATGCATTAGGGTTAGATTTCTTTGTTAACCTCCCTTATCCCTTTTTGGTAGGATGACTGAAGCTTGAATTATAATTGTCTCCATTCCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011374 True 2374 mRNA 0.45 4 20954794 20958447

Neighbor

gene id symbol gene type direction distance location
AMCG00011373 NA coding upstream 215770 20738382 ~ 20739024 (+)
AMCG00011364 NA coding upstream 958824 19987249 ~ 19995970 (+)
AMCG00011363 NA coding upstream 997160 19956472 ~ 19957634 (+)
AMCG00011361 NA coding upstream 999707 19954620 ~ 19955087 (+)
AMCG00011359 NA coding upstream 1035605 19914612 ~ 19919189 (+)
AMCG00011380 NA coding downstream 168663 21127110 ~ 21131535 (+)
AMCG00011381 NA coding downstream 268763 21227210 ~ 21236755 (+)
AMCG00011387 NA coding downstream 360977 21319424 ~ 21385863 (+)
AMCG00011388 LOC105008787,LOC106604502 coding downstream 834081 21792528 ~ 21797963 (+)
AMCG00011390 pcdh1b,LOC107738605,LOC107740130,LOC107593598,LOC107680965,LOC106604502,LOC108438453,LOC107564069 coding downstream 910341 21868788 ~ 21876333 (+)
G106310 NA non-coding upstream 2082 20952222 ~ 20952712 (+)
G106298 NA non-coding upstream 47141 20907450 ~ 20907653 (+)
G106277 NA non-coding upstream 339153 20615438 ~ 20615641 (+)
G106138 NA non-coding upstream 940446 19978247 ~ 20014348 (+)
G106134 NA non-coding upstream 958807 19957005 ~ 19995987 (+)
G106327 NA non-coding downstream 61763 21020210 ~ 21022119 (+)
G106347 NA non-coding downstream 70346 21028793 ~ 21033188 (+)
G106361 NA non-coding downstream 173251 21131698 ~ 21132430 (+)
G106362 NA non-coding downstream 175808 21134255 ~ 21134613 (+)
G106391 NA non-coding downstream 257174 21215621 ~ 21241493 (+)
G106242 NA other upstream 587571 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 615469 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 791828 20095229 ~ 20162966 (+)
G105916 NA other upstream 1732373 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 1837425 19107273 ~ 19117369 (+)
G106613 NA other downstream 2382861 23341308 ~ 23341765 (+)
G106618 NA other downstream 2397615 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 2790227 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 2877372 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 4649539 25607986 ~ 25662179 (+)

Expression


Co-expression Network