AMCG00011378


Basic Information

Item Value
gene id AMCG00011378
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 20981409 ~ 20989043 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011378
GTGTTTTCCTGCAATTGTTTGCGGAGGTCTGCAGGTTATCACTGCGGACACGTCCTACTATTTGGAGCCGCACTTTTCAATTCACACACTTGTACGGGAAATGTAGGATGTAGGAACGGATTGAAAACTATCCATCCCTGCGGAGCAtaatgccattatttatttGCGGGTGCAGTTTTGGCTTTGTTGATGCATTGACCCCAGTGTGCGTCTCTGCAGGCTATTTCTCCCTGCAGGTGATCTACGCCAGGAGGAAATACTCGGTGTCCCCGCCGAGCATCACCGGCCCGCCGGAGTTTGAGCGAGTTTTCCGGGCGCAgGCTAACTGCTCTGAATACTTCCCAATCTTCATCACCATAATGTGGGTGACGGGACTTTACTTTAGCCAAGCTGTTGCCTCCCTGTGTGGACTTCTGTACCTCATTGGCCGATTCCAGTATTTTCAGGGCTACTCTAAGTCTGCTCTGGGAAGaCTGGCTCCACTGTATTTCAGCGCTAAAATGCTGTGGATCTTAATCGGCCTTTCTGCCACGGGGATCATCAACTACATGTGTCGGCTCAATCTGGGAGTGGATTTCCTTCAGTATCTTATGGGTTTCCTCCAAGTGTAGGATGCAAGGACAAGCCAAAGGTTGGCGACTTATATTGGCCAGCTCCCAATCTTGCAATACGAAtcggaaaaaaataagataaaggACTGATAAGTTTTGAACAAGTTGGAATATTTCTCACTTTACTGCAGCTCAAAATTTAGCTCCAGTCCTTTCTAAAAGTATTGCCTTTCCATGATCTTATCTTGCTTTGTATGTAAATTAAGCAATGCAAAATctcttataaaaacaatactagCCTATCTGTAGTTAATTGTAAACTTGACACAACTCAACTCTCTACCCTCCTACGCACACCCCCTccccaaaataaatagtaagCTATGAATGGTCTTGCATTTAGgttgtttttatgaaaatatCTGCACAAGTTTAGACCTCATAGCCTGCTTCACACACAGGAAATTATAGCTGTATATGGTAGCTGTATATGCTGCacaaaattacagtttttctatGAATTGTTTAATAGCTGTTACATTGGAAGGTCTTTGGGGGAAGGAACCTTGAAGTGTTACTTCTGGCTGATTTCATCCTTATCTCTGAAATGTAAGCGCATTTTCTGAGAACggtctgtgtgtatgtaaagatctgtatctttttgtttttctgttttttgtatctATCGCATTATGTTTTCTCGTCGCCACGTaggattaatataaatacactagTTTTCACACATGATATCCGATTTCCCTTTTACAAGTGCAAATGACTACTTGTAAGCAAACAACGggtcaaatgcatttgcaaagttCTCCTAAACACGTTTAAGATTGTGTTCAGCCCTTTTCATCAAAGTGAGGCCTTCTAGTCAAAGCTCCACCTATTCAATCCCTCTGTTCCCGATCCTCTGTGAAGGTGACCGCTCTGGACCGCTCGCTCGAGAAGGTCATGAATGGGTGAATCTGGTTGGAGTGGAAGGGATGGTGATTGTTGGAAGAGTGACAAGGTGTCATCTTGAACACAATCTTGAAGTTATTTCCAGAGCTCTCTGAATGCAAGTTGTCTTTTAAGATGTAGCCCAAGAAAACATACTAGTGGTTCAGAGAACTGCTTTCTTTGGTTAGCCTAGGTCTAATATCTTCAACATGATGTAATGGGTCTTTCCTGTGAAAAGTTTTTGTCTAAACCAAAATAAGAAatttcctttgtgtgtgtgtttctggtgTATATAAAGGTTTCACTCCCCTAGTTGCTCAAGAGTGTATAACTTCCCCGCTTTCAGGGACTCATCCTGGGGCGGAGCGGGTTTGTCCCTTGTTTGGGTGGCATTGGAGCTTGTAGTGTGCCTGAAAATGGGAATTTGAATGTAGTTGGAAGGCATATGCAACAAATTCCAATGAAAACAGTactgatattttcttttcttgaattACCAAATTGAAATATTGAGAAATGCAGATGGAATTTTAGCTACTTAGCATGTGTGATTGGAAATATCAACCTAATGCAACTTTAAGAAAAAGCTTAGACTGATGTGCTGTCTTAGGCCTGGGTCAACATGAAAACTGCTacccacctgcaaaaccataaataacaatacttgctggcttttttttttttttttaacaaaatacagtattgtagTTGTATGCAGACCCTACTTTAAGTACTGTGTTCTTAATTTGTCATTGGCAGGTGGGTCTTAATTTGATTGTTTGGTTTGAGGTTCAGGACCTATTAGTCCACTAACTTCGCTAATGTATGTAGTTCTAATGGATTTCATTCGTGTTTGATATGAATGCGTTTAATGTCATTGGATGATGGAGTTAAATTGTTTTTGCAGAAGCTTTAGTTGACTGATGGAATTAGTTTTAGTACCTGCAGTTTCAATATCTTCTACACTGAAATccatgtaaatgtgttttcatgttttctgaactgtg

Function

GO:

id name namespace
GO:0006691 leukotriene metabolic process biological_process
GO:0043085 positive regulation of catalytic activity biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008047 enzyme activator activity molecular_function

KEGG:

id description
K00807 LTC4S; leukotriene-C4 synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011378 True 2503 mRNA 0.41 4 20981409 20989043

Neighbor

gene id symbol gene type direction distance location
AMCG00011379 NA coding downstream 4250 20976683 ~ 20977159 (-)
AMCG00011376 NA coding downstream 15280 20958864 ~ 20966129 (-)
AMCG00011375 NA coding downstream 74298 20892590 ~ 20907111 (-)
AMCG00011372 NA coding downstream 253268 20713938 ~ 20728141 (-)
AMCG00011371 spock1,LOC106604788,LOC106611816 coding downstream 320802 20645503 ~ 20660607 (-)
AMCG00011377 NA coding upstream 5409 20994452 ~ 21007340 (-)
AMCG00011384 NA coding upstream 22828 21011871 ~ 21021937 (-)
AMCG00011385 mgat4b,LOC106604568 coding upstream 43759 21032802 ~ 21048249 (-)
AMCG00011383 mgat4b,LOC106604568,LOC107550986,LOC107745197,LOC107733437 coding upstream 75100 21064143 ~ 21074776 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding upstream 146383 21135426 ~ 21153802 (-)
G106340 NA non-coding downstream 28554 20951760 ~ 20952855 (-)
G106300 NA non-coding downstream 69271 20911919 ~ 20912138 (-)
G106278 NA non-coding downstream 365767 20615438 ~ 20615642 (-)
G106266 NA non-coding downstream 493221 20486271 ~ 20488188 (-)
G106224 NA non-coding downstream 705104 20272063 ~ 20276305 (-)
G106448 LOC106604502,LOC105008787 non-coding upstream 806582 21795625 ~ 21799926 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding upstream 885769 21874812 ~ 21875126 (-)
G106454 NA non-coding upstream 937810 21926853 ~ 21928367 (-)
G106509 NA non-coding upstream 1661457 22650500 ~ 22653658 (-)
G106527 NA non-coding upstream 1707544 22696587 ~ 22696846 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 1113507 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 1568394 19410368 ~ 19413015 (-)
G105890 NA other downstream 1876140 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 2790214 18180646 ~ 18191195 (-)
G105793 NA other downstream 2980964 17999668 ~ 18000445 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 1553606 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 1754387 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 2064270 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 2404061 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 2824814 23813857 ~ 23817543 (-)

Expression


Co-expression Network