AMCG00011380


Basic Information

Item Value
gene id AMCG00011380
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21127110 ~ 21131535 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011380
CCTGTGTTTACTTAGGAAGGGCTGCTGTCCGCGGACAATAACACAGAGAGTGATCAGGGGATTTCCCGCATAGTTTTCTCCAtaaacttttccattttttttctttgcatgcaCACCCTTGCAAGGCATCTTTGATTGGCTGCCGACCCGTATAAATGGCAGCAGGTAGGCAGACGCAGCCCCACAACAGCCCGGCATCTGCAGGACGTAAACAGGAAGCGCTGCTCAGAGCATTTTCTGCTGCGCAACAAGGCGAGGATTTTCAGCGGATCAGCGCAGACTGAGACCCCGTAAGAGGCCACCATGTCGATGACAGTCAAAGCCTATCTCCTGGGCAAGGAGGACATCCACCGGGAGATCCGCAGGTTCACGGTGGACCAGGACGTGTCCACCAGTTTCGAGTACCTGTCGCGCAAAGTGGCCGAGGTCTTCCAGAGCCTCCGGAGCGCCAACTTCCAGATGCACTACAAGGaTGAGGATAGTGACATGATTGCCTTTGGCTCTGATGATGAGCTGATGATGGGCCTTGCTTGTGTGAAGGATGATACTTTCCGTATCTTTATTAAAGagaaGAGGGAGTGCAAGCGTGACTTCTTTCCCCAAGGATTCCAGGGCCCTGATCGCCATGGCCCCGTCCACTTCCCTccgcctccccctccccacATCCCTCCCAACATGGTGCACCCTCACGTGACATGCGACGGCTGTGAAGGCCAGGTGGCTGGAACGCGCTTCAAGTGCACCGTCTGCCCCGACTATGACCTGTGCTCCACCTGCCAGGCCAAGGGGCTGCACAAGGAGCACGCTCTGCTCCCCATCTGGGCTccctttcaaaatatgtttgagTGGTTCCCCCGTGGGAAGTGGCTGCGTAAGATGAGGCACACCATGCCCCACTGCATGTGGGCTGGAGCACAGAGCCAGGCCCAGCCCTGGCAGGCCGAACCCAAGCCCGCTGCTGCAGGGCATCCTGAGGGAGGGCCAGCCGAATCTCCCGATAACCAGGCCAATGTGGATTACCTGAAAAACATCGGAGAGGGGGTGGCAGCCATGCTGAGTCCTCTGGGCATCGATGTGGACATTGACGTGGAGCATGGAGGAATGCGGACCAAAGTGAACACCGCCCAGCCTGCCTCTGGAGGACCTCCTGCTGGCAAGTCTGGAAGCACGAGCAAGGAAAGACAGTCTGGAGAGGAACCAATGGAAAGTGACCCGGGCACAGCTGGGCCGAGTGGCATGCAAACTGAAAACGCTGGTGCAAAGGTGCAAAGGGAGCCTAACATTGAAGAAGAGTGGACCCACCTGTCCCCAAAAGAAGTGGACCCTTCGACGGGGGAGCTGCAATCGCTGCAGATAGAGGACGGGCATGAAGTGCCAGTGTCTCTCGATGCCTCTCCACCGAGCGGCCCCAGCGGTCTGAGGGAGGCGGCACTCTACCCACACCTTCCACAAGACGCAGACCCGCGCTTGGTGGAGTCCCTGGCTCAGATGTTGTCGATGGGCTTCACTGATGAAGGTGGCTGGCTGACCCGTCTCCTCCACGCCAAAAATTATGACATTGGTTCGGCATTGGACACCATCCAATACTCCAAACCTCCAGCTTCACACAAGAAATAGGACGTCCTGGTTCCTGTGCCAGCAGTGCAACTGTCATTCCTGCCTTTCAGTGACCTATCATTAACTTGGCAAATAACACACACTGTAGAAATAATTTCCTGAAAatagaaactaaacaaattgtCATTACTTGATAATCTACTTAATGGTTTTTTGCACTTTGAAAACTGGTTTCcagattttacatttactaAAGTGTATAATACTGACTCAATAAGAATATAGCCCAACATTGTAACTGaaactagaaaaacaaaccctgtGTACTCAAGTTTTTAATTGATGAAAGGGAGGTAGACTAGGGCTACAAGTCAATTAAAAAGGATAGTCtataccaaaaatgtattttaaatctgcCCAGTGAAACACTGATGAAAAAGAACGGTCAACTATGATTGCCAGTTCTGTTCAATTGAGTTTTATCTTTGGTGTGAGTCTTTATATCAGGTGAAGGGTCTGATACTACAGCATAACTAGTTCACTCtgaatttcttttttctgccttgtctacaaataaaatgcttatGCAAAGTGTTTCT

Function

GO: NA

KEGG:

id description
K14381 SQSTM1; sequestosome 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011380 True 2156 mRNA 0.51 8 21127110 21131535

Neighbor

gene id symbol gene type direction distance location
AMCG00011374 NA coding upstream 168663 20954794 ~ 20958447 (+)
AMCG00011373 NA coding upstream 388086 20738382 ~ 20739024 (+)
AMCG00011364 NA coding upstream 1131140 19987249 ~ 19995970 (+)
AMCG00011363 NA coding upstream 1169476 19956472 ~ 19957634 (+)
AMCG00011361 NA coding upstream 1172023 19954620 ~ 19955087 (+)
AMCG00011381 NA coding downstream 95675 21227210 ~ 21236755 (+)
AMCG00011387 NA coding downstream 187889 21319424 ~ 21385863 (+)
AMCG00011388 LOC105008787,LOC106604502 coding downstream 660993 21792528 ~ 21797963 (+)
AMCG00011390 pcdh1b,LOC107738605,LOC107740130,LOC107593598,LOC107680965,LOC106604502,LOC108438453,LOC107564069 coding downstream 737253 21868788 ~ 21876333 (+)
AMCG00011389 NA coding downstream 792424 21923959 ~ 21924258 (+)
G106347 NA non-coding upstream 93922 21028793 ~ 21033188 (+)
G106327 NA non-coding upstream 104991 21020210 ~ 21022119 (+)
G106310 NA non-coding upstream 174398 20952222 ~ 20952712 (+)
G106298 NA non-coding upstream 219457 20907450 ~ 20907653 (+)
G106277 NA non-coding upstream 511469 20615438 ~ 20615641 (+)
G106361 NA non-coding downstream 163 21131698 ~ 21132430 (+)
G106362 NA non-coding downstream 2720 21134255 ~ 21134613 (+)
G106391 NA non-coding downstream 84086 21215621 ~ 21241493 (+)
G106443 NA non-coding downstream 795364 21926899 ~ 21928577 (+)
G106455 NA non-coding downstream 801069 21932604 ~ 22062654 (+)
G106242 NA other upstream 759887 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 787785 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 964144 20095229 ~ 20162966 (+)
G105916 NA other upstream 1904689 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 2009741 19107273 ~ 19117369 (+)
G106613 NA other downstream 2209773 23341308 ~ 23341765 (+)
G106618 NA other downstream 2224527 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 2617139 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 2704284 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 4476451 25607986 ~ 25662179 (+)

Expression


Co-expression Network