AMCG00011384


Basic Information

Item Value
gene id AMCG00011384
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21011871 ~ 21021937 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011384
ACTATGGAGCTCAAATGGAGGatgtgtgtgttgctgctgGCCCTGGGCTGCGCGGTGGCCCTGGCCCAAGATGATGTCGACGTCGAGGATGCGGACATCGAGTTGGAGGATGATATTAACGAGGCTGTAGAGGGAGAGGAGGCGGCCCCTAGCACCCCTCCAGTTCCCAAGGTGACCTACCAACCTCCTATTCCATCGGGTGATTTTTACTTTGCCGACTCCTTTGATGAAGGAACACTCGATGGGTGGGTTCAGTCAAAAGCAAAGAAGGAAGGCATTGATGAAGAGATTGCCAAGTATGATGGGCAATGGGAGGTGGAAGAAATGCAAGATACGAAACTCCTGGGAGATAAAGGTCTGGTTCTGAAGTCTCGCGCCAAACACCACGCCATCTCTGCCAAACTCCggaaaacttttgtttttgacacCAAGCCCCTCATTGATGAGTTTGTGGATAAGACCCCATACACGATCATGTTTGGGCCAGACAAATGCGGGGAGGATTACAAGCTGCACTTCATCTTCCGTCATAAAAACCCCAAAACCGGAGAGTACGAAGAGAAACACGCCAAGAAGCCTGATGCCGACCTCCGCACTTACTACACCGACAAGAAGACCCACCTCTACACCTTGGTGCTAAACCCGGACAACAGCTTTGAGATCCTGATCGACCAGACCGTTATCAACAGTGGGAACCTCCTGACTGACATGAGCCCTGCCGTCAACCCCGCCGCTGAGATCGAGGACCCTGATGACCAGAAGCCTGAAGACTGGGACGAGAGGCCCAAGATTCAAGACCCCGATGCAGTCAAACCTGAGGACTGGGATGAAGATGCCCCTGCCAAGATCGCTGATGAGGAGGCAGTGAAACCAGAGGGATGGTTGGATGACGAACCGGAGTACACCTCAGACCCCGACGCCATTAAGCCTGAGGACTGGGATGAGGATATGGATGGTGAGTGGGAAGCTCCTCAGATCCCCAACGCTAAGTGTGAGACCGCCCCTGGCTGTGGGCCGTGGCAGCGTCCAATGATTGACAATCCGAACTACAAGGGCAAATGGAAGCCGCCCATGATTGACAACCCTAACTACCAGGGAGTGTGGAAACCGAGGAAAATCCCCAACCCCGATTTCTTTGAAGATCTGCACCCCTTCCGTATGACTGCCATCAGCGCTGTGGGGCTGGAGCTGTGGTCCATGTCCTCGGACATCTTCTTTGATAACTTCATGGTCTGCTCGGAGCGCACGGTGGCGGAGCAGTGGGCCAAGGATGGCTGGGGGCTGAAGAAGGCTGCGGAGGGAGCTGCAGAGCCTGGTCTCGTTACTCAGATGATGTCGGCGGCGGAGGAGCGGCCCTGGCTCTGGGTGGTGTACATCCTGACCGTGGCCCTGCCCGTATTCCTGCTCTTCGTCTTCTGCTGCTCTGGGAAGAAAAAGACGTCGGATGCACAGTATAAAAAGACCGATGAACCTCAGCCTGATGTGActgaggaggagaaggaggaagaagaCAAGGAAAAtggagaggaggaagatgacaaggaggaagaggagaaacaaGgagaggagaagaAAGGCGATGGAGAGGAGAGCCAAGAAGAAGAGGTGGCTGAAGAAGAAAAGGAGGAAGATGGGGATAAAAGTGATGAGAAGAAAGATGACGATATTCTGAGAAGGTCCCCCAGAAGCAGAAAGCCAAGGAAGGACTGA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08054 CANX; calnexin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011384 True 1710 mRNA 0.54 13 21011871 21021937

Neighbor

gene id symbol gene type direction distance location
AMCG00011377 NA coding downstream 4531 20994452 ~ 21007340 (-)
AMCG00011378 NA coding downstream 22828 20981409 ~ 20989043 (-)
AMCG00011379 NA coding downstream 34712 20976683 ~ 20977159 (-)
AMCG00011376 NA coding downstream 45742 20958864 ~ 20966129 (-)
AMCG00011375 NA coding downstream 104760 20892590 ~ 20907111 (-)
AMCG00011385 mgat4b,LOC106604568 coding upstream 10865 21032802 ~ 21048249 (-)
AMCG00011383 mgat4b,LOC106604568,LOC107550986,LOC107745197,LOC107733437 coding upstream 42206 21064143 ~ 21074776 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding upstream 113489 21135426 ~ 21153802 (-)
AMCG00011386 NA coding upstream 139392 21161329 ~ 21214630 (-)
AMCG00011393 NA coding upstream 1542162 22564099 ~ 22600783 (-)
G106340 NA non-coding downstream 59016 20951760 ~ 20952855 (-)
G106300 NA non-coding downstream 99733 20911919 ~ 20912138 (-)
G106278 NA non-coding downstream 396229 20615438 ~ 20615642 (-)
G106266 NA non-coding downstream 523683 20486271 ~ 20488188 (-)
G106224 NA non-coding downstream 735566 20272063 ~ 20276305 (-)
G106448 LOC106604502,LOC105008787 non-coding upstream 773688 21795625 ~ 21799926 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding upstream 852875 21874812 ~ 21875126 (-)
G106454 NA non-coding upstream 904916 21926853 ~ 21928367 (-)
G106509 NA non-coding upstream 1628563 22650500 ~ 22653658 (-)
G106527 NA non-coding upstream 1674650 22696587 ~ 22696846 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 1143969 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 1598856 19410368 ~ 19413015 (-)
G105890 NA other downstream 1906602 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 2820676 18180646 ~ 18191195 (-)
G105793 NA other downstream 3011426 17999668 ~ 18000445 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other upstream 1520712 22542649 ~ 22554137 (-)
AMCG00011399 NA other upstream 1721493 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 2031376 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 2371167 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 2791920 23813857 ~ 23817543 (-)

Expression


Co-expression Network