AMCG00011387


Basic Information

Item Value
gene id AMCG00011387
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21319424 ~ 21385863 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011387
ATGACGTTCAAGGGGTCCCCGACCACAGTGCTCCTCATCCCTTCGCTCTACTTGGTGGCCTTCATCATTGGACTCCCAGCCAATGCCACAGCTCTGTGGGTCCTTATAGCCAGAACCAAGAAGATGCCCTCCACTGCTTTACTCATCAACCTGACCAGCGCAGACCTCCTGCTCATGGTGGTTCTTCCCTTCAGGATTGCCTACCACTTCCAGGGCAACAACTGGATCTTTGGGGAGGTCACCTGCAGATGTGTCTCTGCTCTGTTTTATAGCAACATGTATGGCTCCATTATTTGTCTCATGCTCATCAGTATTGACAGATACTTTGCCTTTGTTCACCCATTTGGTGCCCAGGCCTTCAGAAGCAGAAAAAACTCCATCTGCATGAGTCTCGCTGTGTGGGCGGTTGTGATAGGGGCCATGCTGCCATTGCTCCTCACTCGGCAGGCCTACACTGTAGCAAACTCAACCATCACCCTCTGCCATGACGCTCTTCCACAGATGGATCAAGAGAAAGTGTTCTTTCCATACTTCACCAGCCTCTTCGCCATCGGCTTTGTCATCCCCTTGTGTGTCATCTTGTTCTGTTACGGCTCGATTCTGTGGACGTTGGTGTCCAGTGACAAGCGCTACATCCACGCAGTCAAGGTTACAGTGCTTGTGCTGGTGGTCTTCATTGTTTGCTTCCTGCCCAGCAACATCATGCTTCTCCTGCACTACTCCAGTCTGTTGGAGAATAGCGAGGAATTGTATTTACCTTACATGATTAGTCTGGCTCTCAGCACCTTCAACAGCAGCCTTGACCCCTTCATCTATTACTATGTGTCTGATGATTTCAGAGCCAAGGCTACAAAgcTAACAGCACCATATAAAGACCACAGCAGTGAGAGAGGAGTGCCCATTTCTTCGGATGTGACTGCTACATTGGTCTTGGAAACAGCAGATCATGTCATTCACCTCAGTGTACAAGTGCCGTTCAGTTTCAGAATCAGTGTAGATAATGGCATACATGAAGTGGATAATCAAAGCGTGGAGATTTTACAGTCCCCGACCACAGTGCTCCTCATCCCTTCACTCTACTTGGTGGCCTTCATCATTGGACTCCCAGCCAATGCCACAGCTCTGTGGGTCCTTATAGCCAGAACCAAGAAGATGCCCTCCACTGCTTTACTCATCAACCTGACCAGCGCAGACCTCCTGCTCATGGTGGTTCTTCCCTTCAGGATTGCCTACCACTTCCAGGGTAACAACTGGATCTTTGGGGAGGTCACCTGCAGATTTGTCTCTGCTCTGTTCTATGGCAACATGTATGGCTCCATTCTGTGTCTCATGCTCATCAGTATTGACAGATACATCGGCCTGGTCCATCCTTTGAGTGCAAAGGTCTTCAGAAGCAGAAAAAACTCCATCTGCATGAGTCTCGCTGTGTGGGCGGTTGTGATAGGGGCCATGCTGCCGTTGCTCCTCACTCGGCAGGCCTACACTGTAGCAAACTCTACCATCACCCTCTGCCATGACGCTCTTCCACAGATGGATCAAGAAAAAGTGTTCTTTCCATACTTCACCAGCCTCTTCGCCGTCGCCTTTGTCATCCCCTTGTGTGTCATCTTGTTCTGTTACGGCTCAATTCTGTGGACGCTGGTGTCCAGTGACAAGCGCTACATCCACGCAGTCAAGGTTACAGCGCTTGTGCTGGTGGTCTTCATTGTTTGCTTCCTGCCCAGCAACATCATGCTTCTCCTGCACTACTCCAGGTTGTTGGAGAATAGCGAGGAATTGTATTTCCCTTACATGATCAGTCTGGCTCTCAGCACCTTCAACAGCAGCCTTGACCCCTTCATCTATTACTATGTGTCTGATGACTTCAGAGCCAAGGCTACGAAGCTGCTGAGAAAGAGGGGGGAGATGAAGACATGTTCTGTGATTCGCACAGTGATACTGTGTGTTCGGGTCTCGGGGGCCGATGTCAACCCTCATCTGAGGCCTGTGGTGGGGTCTACACTGACCAAGGCTCAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011387 True 2019 mRNA 0.50 7 21319424 21385863

Neighbor

gene id symbol gene type direction distance location
AMCG00011381 NA coding upstream 82669 21227210 ~ 21236755 (+)
AMCG00011380 NA coding upstream 187889 21127110 ~ 21131535 (+)
AMCG00011374 NA coding upstream 360977 20954794 ~ 20958447 (+)
AMCG00011373 NA coding upstream 580400 20738382 ~ 20739024 (+)
AMCG00011364 NA coding upstream 1323454 19987249 ~ 19995970 (+)
AMCG00011388 LOC105008787,LOC106604502 coding downstream 406665 21792528 ~ 21797963 (+)
AMCG00011390 pcdh1b,LOC107738605,LOC107740130,LOC107593598,LOC107680965,LOC106604502,LOC108438453,LOC107564069 coding downstream 482925 21868788 ~ 21876333 (+)
AMCG00011389 NA coding downstream 538096 21923959 ~ 21924258 (+)
AMCG00011392 NA coding downstream 1118109 22503972 ~ 22506745 (+)
AMCG00011394 NA coding downstream 1214055 22599918 ~ 22603575 (+)
G106391 NA non-coding upstream 77931 21215621 ~ 21241493 (+)
G106362 NA non-coding upstream 184811 21134255 ~ 21134613 (+)
G106361 NA non-coding upstream 186994 21131698 ~ 21132430 (+)
G106347 NA non-coding upstream 286236 21028793 ~ 21033188 (+)
G106327 NA non-coding upstream 297305 21020210 ~ 21022119 (+)
G106443 NA non-coding downstream 541036 21926899 ~ 21928577 (+)
G106455 NA non-coding downstream 546741 21932604 ~ 22062654 (+)
G106457 NA non-coding downstream 704194 22090057 ~ 22090265 (+)
G106464 NA non-coding downstream 925851 22311714 ~ 22311963 (+)
G106478 NA non-coding downstream 1157416 22543279 ~ 22544072 (+)
G106242 NA other upstream 952201 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 980099 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 1156458 20095229 ~ 20162966 (+)
G105916 NA other upstream 2097003 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 2202055 19107273 ~ 19117369 (+)
G106613 NA other downstream 1955445 23341308 ~ 23341765 (+)
G106618 NA other downstream 1970199 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 2362811 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 2449956 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 4222123 25607986 ~ 25662179 (+)

Expression


Co-expression Network