AMCG00011390 (pcdh1b,LOC107738605,LOC107740130,LOC107593598,LOC107680965,LOC106604502,LOC108438453,LOC107564069)


Basic Information

Item Value
gene id AMCG00011390
gene name pcdh1b,LOC107738605,LOC107740130,LOC107593598,LOC107680965,LOC106604502,LOC108438453,LOC107564069
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 21868788 ~ 21876333 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011390
ATGTTACGGTTGCCACATCGACGAGTGACCTTCTCTACAGCCAATCAAGCGCAAGACCTGCAGGACCCCTCCCAGCACAGTTACTATGACAGCGGGTTGGAAGAATCTGAGACCCCGAGCAGCAAGTCCTCTTCAGGTCCCAGGATTGGACCCCTGGCTCTCCCTGAGGACCACTACGAGAGGACCACCCCTGATGGCAGCATCGGTGAAATGGAGCACCCAGAAAATGGATGTGGTGATGTGGGTGTGGGGTAG

Function

symbol description
pcdh1b Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Orthologous to human PCDH1 (protocadherin 1).

NR:

description
PREDICTED: protocadherin-1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011390 True 255 mRNA 0.56 3 21868788 21876333

Neighbor

gene id symbol gene type direction distance location
AMCG00011388 LOC105008787,LOC106604502 coding upstream 70825 21792528 ~ 21797963 (+)
AMCG00011387 NA coding upstream 482925 21319424 ~ 21385863 (+)
AMCG00011381 NA coding upstream 632033 21227210 ~ 21236755 (+)
AMCG00011380 NA coding upstream 737253 21127110 ~ 21131535 (+)
AMCG00011374 NA coding upstream 910341 20954794 ~ 20958447 (+)
AMCG00011389 NA coding downstream 47626 21923959 ~ 21924258 (+)
AMCG00011392 NA coding downstream 627639 22503972 ~ 22506745 (+)
AMCG00011394 NA coding downstream 723585 22599918 ~ 22603575 (+)
AMCG00011395 NA coding downstream 727683 22604016 ~ 22630597 (+)
AMCG00011397 LOC108416539,LOC105007475 coding downstream 769699 22646032 ~ 22650834 (+)
G106391 NA non-coding upstream 627295 21215621 ~ 21241493 (+)
G106362 NA non-coding upstream 734175 21134255 ~ 21134613 (+)
G106361 NA non-coding upstream 736358 21131698 ~ 21132430 (+)
G106347 NA non-coding upstream 835600 21028793 ~ 21033188 (+)
G106327 NA non-coding upstream 846669 21020210 ~ 21022119 (+)
G106443 NA non-coding downstream 50566 21926899 ~ 21928577 (+)
G106455 NA non-coding downstream 56271 21932604 ~ 22062654 (+)
G106457 NA non-coding downstream 213724 22090057 ~ 22090265 (+)
G106464 NA non-coding downstream 435381 22311714 ~ 22311963 (+)
G106478 NA non-coding downstream 666946 22543279 ~ 22544072 (+)
G106242 NA other upstream 1501565 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 1529463 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 1705822 20095229 ~ 20162966 (+)
G105916 NA other upstream 2646367 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 2751419 19107273 ~ 19117369 (+)
G106613 NA other downstream 1464975 23341308 ~ 23341765 (+)
G106618 NA other downstream 1479729 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 1872341 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 1959486 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 3731653 25607986 ~ 25662179 (+)

Expression


Co-expression Network