AMCG00011393


Basic Information

Item Value
gene id AMCG00011393
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22564099 ~ 22600783 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011393
GTTCCAAAGAGATTTGATTCTCTGATCAAACGGGACTGTACAGTCAAGAGCGAGGCGAGGAGAGGTAGGAGATACCTGGAGCACGAGTCGCTAGTTAACAGCACTGGCATCTTAGTCAACAAGAGTCACCTTGACAAGCCCGGCGAGCTGCGCCACGCGTTCTGTGCACAGCAGTCTTCTGGTCAGATTCCAGGCACGGATAAAAAATACTTCACCAACTGCAAACAGTGGTACCATCGCAAGGTCTGTGGGAAGTCAACggTTATCAGCTATGAATGCTGTCCTGGATATGAGAAAGTACATGGGGAAAGGGGTTGCCCTTCAGCTCTGCCTCTCACCAATCTCTTCAACACCCTGGGCATGGTCGGAGCCACCACCACCAAGATGTATTCTGACAGAGCTGAGCTACGGCCAGAGATTGAGGGCCCAGGGAGCTTCACCATGTTTGCCCCCAGCAACAACGCCTGGTCTGCCTTGCCTACTGAAATTCTTGATGCCCTGGTGAGCAATGTCAACATTGAGCTGCTGAACGCGCTCCACTATCACATGGTGAACAGACGCTTGACATCTGAGGACCTGAAGCACGGCATGGCCATTCCTTCCATGTACCAGGACTTCGAAGTGCACATCCATCACTACCCCAATGGAATCGTAACTGTGAACTGTGCCCGCCTGGTGAAGACTGACCAACACGCTACCAATGGCGTGGTACACGTTGTCGACCGGGTCATTACAGCAATCACCAACACCGTGCACCAAACCATTGAGACGGACGACAACCTGGAAACACTGCGTACTGCTGTGGCGGCTGCTGGCCTCACAACTCTTCTGGAAAGCAATGGACATTTTACTGTGTTTGCGCCAACCAACGAGGCCTTTGAGAAAATCCCCCCTGAAACCTTGAACAGGATTCTGGGAGACCCTGTTGCTCTGAAAGACATGCTGAACTACCACATCCTGAACTCCATCCAGTGCTCTGAGGCGATCGTTGCCGGCACCCCCATGGAAACACTGCAAGGCACAGTCCTGGAGGTGGGCTGTGACGGATCTCAACTGACTCTCAATGGCAAAGCTATCATCTCTGACAAAGATCATCTGGGTACCAATGGAGTCATTCACTACATCGATGAGCTCCTCATCCCTGACTCAGCCAAGACCCTTTTGGAGTTGGGCCAGGATTCTACTCTTACCAGCGCGATGACGTTGTTTGTTGATGCTGGCCTGAACTCCTATCTGACGGGCAGTGAGCCCCTCACCCTGCTAGCTCCCCAGAACGATGCATTCAAAGATACCAGCCTATCAGTCACTCCTGCAGTGAGGAAGCTTCTGCGCAACCATGTTGTTAAGGAGCAGCTAACCTCCAAACACTTGTATCATGGCCAAGAACTAGAGACGCTTGAAGGACTGAAGCTCCGAGTGTTTGTGTACCGCAATTCCCTCTGCATTGAGAACGCTTGCATTGCAGCTCATGACAAGAAAGGCCGATATGGATCTCTCTTCATTGTGGACAAGGTTCTGACCCCACCTATGGGAACGGTCATGGATGTCCTGAAGGGAGACTCTCGCTTCAGTACCCTGGTTGGTGCCATTCAGAAGGCCGGTCTTACAGAGATGATGAATAGACGTGGGGCCTATACAGTCTTCGCCCCGACCAATGAAGCCTTCAGCGCCATGCCTCAAGGGGAACTGAACAAACTCATGGCGAACCCTCGACAGCTGGCCAATGTGCTGAAGTACCACATTGGAGAGGAGATCCTGGTCAGTGGCGGAGTGGGCTCTCTGTCCAGACTAAAGCCCCTTCAGGGAGAGAAACTGGAGCTGAGCATGaaaaatagcACTGTCTATATCAACAAGGTGCCAGTGATTGAAGCGGATATGATGGCCACCAATGGAGTAGTCCATGCCGTTGGCTCCGTTCCGCAGGCGCAAGTCATGAAAAACGATGACCTATTTCAGAAGGTTTTGTCAAGTCACTCCAGCCGACGAGTTAGCCGTTAACTTCCAGCAACTTctgtgaagaggaaaaaaaacaaaatctttagaGCTACTAATTTCATTAAAAGCTATTCCTTTTTCTGTGGGATGTATTCTCACACTTGAATGTTCAGCGGGTGTAAgtctttaaatgtcttttttttccacaaatgtaaagacaaaaatatacatagtttgaaaagtaaatatttgtaatttttttaagcagaaGGCTAACATTAGATAAAACAGAGAGTTGACTTAAGTTCATTTGATGGGGCGTTGATGCTAAGCTGGGAGAAATGGTTAGGGGTAAGTTTGttcatattttctgaaattgtcATGCAAACTGGTTTCAAATAATCAGATACATGATAATACAAAACTACCTTTCTTTTTAAGACTTAAAGATAAAaccaaacagatttttttttttaatctttacatatattattttcctataACTAGCATGTTTGCATGGTATAAGCTGGAACTAAAATCAATTTAGCGTAATTCTATTTGATTGTTAGATTTAAGTAAACTGTCTAGTTCATTTTTgcaggtttgtgtttttgaaacaaactgtaaaacacaaatatacactcaaccacacacacacgttttgtAAGATACTGTACTAATAACGTTTGTCTggacaaaaaatgaataaaaaaggttaaaaaaaaaatctgggcatcaaaaaataaaaaataaatacttttgtagCCAAAGTGTTTtggtttatatacatttgtaccTATAAGGTTTACAAGGTTTAACGtgtctaattttattttatttatcttttgtttggtttgtttgtcttcACTTGCAGTTATAGTACAACTCAAAGATCTGTGCATGGTTGTGCAACAGTGGAAAATCCTGATTGTCAGTTCAGCTAGGAAACTGATTTGTGTAACattgtgtcattgtgttacTTTTAAGTGTTAAGCAGTAATTAGGACATTATAGACATTACATTTATGCATTGgttaattatatttaacttgCCATGCAGAGTTAAAGGACACAGACATTGAAGGTGAGCTTAGTCTTGTGTCCTTATAATGGTGGTCATTGGTAAAAGTGGCTGTCAAAGGTAGACCTCAATCAGCTGACAAGGCTAAAAGGCTCACTCAGCCTTTTAAATAAAGGCATTCGTCTTTCACTTAATACTTCAAAAGACCTGTGGTTGCAGCCTAGGACTGTCtagtcctgttttttttaagtctgcAGTCTGTCTGTCGTCAAAGTGGTGAGAAACCTAATGCTACTTCTAAATCCTCATAGTTTGTGGCTCAATCTGACTTTTATAAACTGGAATTCCTATTGAAAATTACATATCTTGAGCACAGCTGCAGACACTTTAgctcttcatatatatatataattcaacatCAGTAGTGAATCTATCTTTTCCACATGTTCCCTGATTTTAAAAGGCTGTCGAATTAAACTACTGTAATGTGTAAATTCTTCAGGTTAGATCTCTTGCCATTTTGAGGAGAACTGGGTTCCACGTATCTGTACTGTTTAATAAACACATGTGTTTTCATTCA

Function

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process

KEGG:

id description
K19519 TGFBI, BIGH3; transforming growth factor-beta-induced protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011393 True 3536 mRNA 0.43 17 22564099 22600783

Neighbor

gene id symbol gene type direction distance location
AMCG00011386 NA coding downstream 1349469 21161329 ~ 21214630 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding downstream 1410297 21135426 ~ 21153802 (-)
AMCG00011383 mgat4b,LOC106604568,LOC107550986,LOC107745197,LOC107733437 coding downstream 1489323 21064143 ~ 21074776 (-)
AMCG00011385 mgat4b,LOC106604568 coding downstream 1515850 21032802 ~ 21048249 (-)
AMCG00011384 NA coding downstream 1542162 21011871 ~ 21021937 (-)
AMCG00011400 NA coding upstream 93358 22694141 ~ 22694827 (-)
AMCG00011398 NA coding upstream 137895 22738678 ~ 22743075 (-)
AMCG00011401 NA coding upstream 179904 22780687 ~ 22790227 (-)
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding upstream 338957 22939740 ~ 22949010 (-)
AMCG00011412 g3bp1,LOC107567204,LOC107662011 coding upstream 740217 23341000 ~ 23345841 (-)
G106454 NA non-coding downstream 635732 21926853 ~ 21928367 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding downstream 688973 21874812 ~ 21875126 (-)
G106448 LOC106604502,LOC105008787 non-coding downstream 764173 21795625 ~ 21799926 (-)
G106340 NA non-coding downstream 1611244 20951760 ~ 20952855 (-)
G106300 NA non-coding downstream 1651961 20911919 ~ 20912138 (-)
G106509 NA non-coding upstream 49717 22650500 ~ 22653658 (-)
G106527 NA non-coding upstream 95804 22696587 ~ 22696846 (-)
G106547 NA non-coding upstream 158751 22759534 ~ 22761316 (-)
G106587 NA non-coding upstream 261825 22862608 ~ 22862952 (-)
G106601 NA non-coding upstream 493508 23094291 ~ 23097328 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other downstream 9962 22542649 ~ 22554137 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 2696197 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 3151084 19410368 ~ 19413015 (-)
G105890 NA other downstream 3458830 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 4372904 18180646 ~ 18191195 (-)
AMCG00011399 NA other upstream 142647 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 452530 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 792321 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 1213074 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 1228514 23829297 ~ 23835074 (-)

Expression


Co-expression Network