AMCG00011394


Basic Information

Item Value
gene id AMCG00011394
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22599918 ~ 22603575 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011394
ATGCCCGCCCTGCCTCCCCGGCTGTCCGTAATTGCGAAAACGGTCACAGGATACCTGACCAGAAGACTGCTGTGCACAGAACGCGTGGCGCAGCTCGCCGGGCTTGTCAAGTCCTGTAGCGCTGAGGTCACCACCGCCATATCCACCCACGGGGAAGAGCTGGCAGCCCTGTTTGTGTGTCCGGTGTGTTTCGAGCACGTGCAGCCGCCCATCCTGCAGTGCCGGGCCGGACACCTGCTCTGCAATGAGTGTCGGCCGAGGGTGAGCAGCTGCCCGTGCTGCCGCGAGCCGCTGACGCCAGACAGCAGGAACGTGGCCATGGAGACGCTGGCCACCATGGTCCCATTCCCCTCCGAGGAGCGCTGTGAGCCAGAGGAGACCCCAGTCAAGAACAACCCTCATGACGAGGCTTGCGTGATCTGGGAGGCATCTGAGAGAGATGCGCGCACCAGCAAAGGTGATAACAAGCCGGGGGTGGGACGGTGGGGCCGGTCAAGGCTGGAGACCCCCCATCTGCCCCTCACAAGCATTCCAGAAACTCCCACTGGAGACATGCCTCAAAAAGCAGGTCTAAACTGGGGGCTAAAAGCCGGGGGCCAGTGA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011394 True 603 mRNA 0.63 3 22599918 22603575

Neighbor

gene id symbol gene type direction distance location
AMCG00011392 NA coding upstream 93173 22503972 ~ 22506745 (+)
AMCG00011389 NA coding upstream 675660 21923959 ~ 21924258 (+)
AMCG00011390 pcdh1b,LOC107738605,LOC107740130,LOC107593598,LOC107680965,LOC106604502,LOC108438453,LOC107564069 coding upstream 723585 21868788 ~ 21876333 (+)
AMCG00011388 LOC105008787,LOC106604502 coding upstream 801955 21792528 ~ 21797963 (+)
AMCG00011387 NA coding upstream 1214055 21319424 ~ 21385863 (+)
AMCG00011395 NA coding downstream 441 22604016 ~ 22630597 (+)
AMCG00011397 LOC108416539,LOC105007475 coding downstream 42457 22646032 ~ 22650834 (+)
AMCG00011396 NA coding downstream 66166 22669741 ~ 22691805 (+)
AMCG00011404 NA coding downstream 140946 22744521 ~ 22749846 (+)
AMCG00011405 NA coding downstream 149075 22752650 ~ 22785942 (+)
G106485 NA non-coding upstream 32657 22564099 ~ 22567261 (+)
G106481 NA non-coding upstream 45428 22554259 ~ 22554490 (+)
G106479 NA non-coding upstream 52511 22547164 ~ 22547407 (+)
G106477 smad1,smad5,LOC107598346 non-coding upstream 55483 22544184 ~ 22544435 (+)
G106478 NA non-coding upstream 55846 22543279 ~ 22544072 (+)
G106513 NA non-coding downstream 89162 22692737 ~ 22694844 (+)
G106586 NA non-coding downstream 259033 22862608 ~ 22862952 (+)
G106588 NA non-coding downstream 325554 22929129 ~ 22935544 (+)
G106607 NA non-coding downstream 603671 23207246 ~ 23207477 (+)
G106609 NA non-coding downstream 750053 23353628 ~ 23355643 (+)
G106242 NA other upstream 2232695 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 2260593 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 2436952 20095229 ~ 20162966 (+)
G105916 NA other upstream 3377497 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 3482549 19107273 ~ 19117369 (+)
G106613 NA other downstream 737733 23341308 ~ 23341765 (+)
G106618 NA other downstream 752487 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 1145099 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 1232244 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 3004411 25607986 ~ 25662179 (+)

Expression


Co-expression Network