AMCG00011395


Basic Information

Item Value
gene id AMCG00011395
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22604016 ~ 22630597 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011395
ATGTCCACCCAGGGGACGGAAGGACGTGAACTGGACTGCAAACCCCCTCACAAGGAGACGCACTCTACTGTGGGGGAAAAGCACACCAGCGGTGGGAACGCGGCATGTGTCACACCTCCAGCACGAGACCCAAAATGCACAAAACTGGAATTAGCCATGTTGGGTGTTCAGAAGTCTCTTCCAATGGTGGAAAAGGTCTATGACTTACTACAGCTGGTatggaaaacatacaattttagCCCCAAAAGCAAGCATGATTTGAAAGCCATCGGTATGGAGTTAGGCTGCGCCATACGAACACCTTCTGCAGTGAAGACCCAGCGCTGGTTGCCTCACATTTACTGGgccctttctgtttttcttgcttctGATCACACTACAGATTCCTGGCCAGACGACGTCCACACTTATgtagaaaatgaaattgaaaagctGCTGAAATGGTATCAAGGCATCTTGCTGAAAAATGGATGTGACATCAGTCCTGTACAGGCAGAATGGAGATTGCTGAAAACTCTTCGTTTGAAGAAAGTCTTCTATGAGAACATGGTCCAGTTTTTTGAGGCCAAGTGGAGGCGCATGCATGGAATTGATCAAGACACCCTGTTCCACTACCTGCCGTCTTCGCTGCGTGGGGATATTTCCACCTTCATGTATGCAGACCTGATCGCAAAGGTAACATGTTCATCAGCTCGTCAGTATATCACTCAGCACGGGGGGGGGCTCGGCACAGCGCTGCTGCCACAGCTCACACATACAGCCCTGTGTTCAAGcgGGGAGTATCTGGCGAGGAGACGAGACATCACCACGCAGATGTTTGTGGTGGTGAAGGTGGTCAGGAACAGACAGGTGGAGTTCCTGTCCACGGGCGCAACCTACGGGGGCAAAGAGCTGGTCCTACAGATGCCATACAGAGAGTCGTGGATATCCAATCTGTATTTGGAAGTCCACGCTCTCCTGGAAGACGACTTTCATGCAGTGGCCTCCCTCTACTGGTATGACATGGACTCCCTCAACATGCAGTCCAGTGCGTACGTCCAGCGCTGGGAAGGGCACTGCAGCCTGAAGCAAGAGGAGAGACAAACGTGTGGCTGCCTTCCTGGGGCAGTGAACCCAGAAATCGCCATTTCTTTCTTGATGGAAGACCttACTTTGTGGCTTCCTGAGCAGATCCCAGCCATACTCGGGCTGCCAGCGGCCTCTGCGGTTTGTTTGAATCGGCGTCTTTCAATCCCAAAGGCGTGGTTTTCCTCTGCAGTGTGCAGGACGCGCCTGTCCCACCTGCTCGTGATCGGATCTCCTGCAGTGGAAAGCAGTTTTTCCAGCACACAAGAGTGGCCTCACACAGCCTCACATGACCACCTACTCCAGCAGCCGCGGACAATTCGGGAACAAGTATGTTCCGTCAAACATGAAGTGATCGTGGCTGAAGCCCAGGCACATGTGGCTGAGACAGAGGCTACAATCCTGACGGCCCGAGCTCGACATGAaTATGGAAAAGCCAAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011395 True 1509 mRNA 0.52 9 22604016 22630597

Neighbor

gene id symbol gene type direction distance location
AMCG00011394 NA coding upstream 441 22599918 ~ 22603575 (+)
AMCG00011392 NA coding upstream 97271 22503972 ~ 22506745 (+)
AMCG00011389 NA coding upstream 679758 21923959 ~ 21924258 (+)
AMCG00011390 pcdh1b,LOC107738605,LOC107740130,LOC107593598,LOC107680965,LOC106604502,LOC108438453,LOC107564069 coding upstream 727683 21868788 ~ 21876333 (+)
AMCG00011388 LOC105008787,LOC106604502 coding upstream 806053 21792528 ~ 21797963 (+)
AMCG00011397 LOC108416539,LOC105007475 coding downstream 15435 22646032 ~ 22650834 (+)
AMCG00011396 NA coding downstream 39144 22669741 ~ 22691805 (+)
AMCG00011404 NA coding downstream 113924 22744521 ~ 22749846 (+)
AMCG00011405 NA coding downstream 122053 22752650 ~ 22785942 (+)
AMCG00011406 NA coding downstream 166881 22797478 ~ 22797829 (+)
G106485 NA non-coding upstream 36755 22564099 ~ 22567261 (+)
G106481 NA non-coding upstream 49526 22554259 ~ 22554490 (+)
G106479 NA non-coding upstream 56609 22547164 ~ 22547407 (+)
G106477 smad1,smad5,LOC107598346 non-coding upstream 59581 22544184 ~ 22544435 (+)
G106478 NA non-coding upstream 59944 22543279 ~ 22544072 (+)
G106513 NA non-coding downstream 62140 22692737 ~ 22694844 (+)
G106586 NA non-coding downstream 232011 22862608 ~ 22862952 (+)
G106588 NA non-coding downstream 298532 22929129 ~ 22935544 (+)
G106607 NA non-coding downstream 576649 23207246 ~ 23207477 (+)
G106609 NA non-coding downstream 723031 23353628 ~ 23355643 (+)
G106242 NA other upstream 2236793 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 2264691 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 2441050 20095229 ~ 20162966 (+)
G105916 NA other upstream 3381595 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 3486647 19107273 ~ 19117369 (+)
G106613 NA other downstream 710711 23341308 ~ 23341765 (+)
G106618 NA other downstream 725465 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 1118077 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 1205222 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 2977389 25607986 ~ 25662179 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_00220804_00222613 NA coding CI01000112 null 220664 ~ 222659 (+)