AMCG00011397 (LOC108416539,LOC105007475)


Basic Information

Item Value
gene id AMCG00011397
gene name LOC108416539,LOC105007475
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22646032 ~ 22650834 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011397
aTGAGAATAGTCTGTAAGGATGTCACAGCAGAAACTCTGTACGACGTCCTCCACGACACCAGCTACCGCAAGAAGTGGGACACAAACATGATTGAGACGTTTGACATCGGGAGGTTGACTGTAAACGCCGATGTTGGGAAATGCCCCAGCCCTCTAAAGAACAGAGATTTCATCACACTGCGATCCTGGCTTCCTCTTGGCAGCGACTATTTGATCATTAACTACTCGGTTAAGCACCCACAATATCCTCCAAAGAAGGACTATGTGAGGGCTGTGTCACTGCAAACAGGATACCTGATCCAGTCCAATGGGGTCAGCTGCTGCACCCTTTACTATCTAACACAGGTCGATCCAAAAGgTTCTTTGCCCAAGTGGGTGGTGAATAAGGTCTCTCAGTTTGTTGCGCCGAAGGCCATGAAGAAGATTTACAAGGCGAGCCAGAAATACCCCGAGTGGAAGCGGAAACACAACCCCAATCTGAAGCCGTGGATGTTCCCCGAGCAGAACACGCTCCCCTGCATCAGCCTGGCCGAC

Function

NR:

description
PREDICTED: PCTP-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011397 True 534 mRNA 0.51 5 22646032 22650834

Neighbor

gene id symbol gene type direction distance location
AMCG00011395 NA coding upstream 15435 22604016 ~ 22630597 (+)
AMCG00011394 NA coding upstream 42457 22599918 ~ 22603575 (+)
AMCG00011392 NA coding upstream 139287 22503972 ~ 22506745 (+)
AMCG00011389 NA coding upstream 721774 21923959 ~ 21924258 (+)
AMCG00011390 pcdh1b,LOC107738605,LOC107740130,LOC107593598,LOC107680965,LOC106604502,LOC108438453,LOC107564069 coding upstream 769699 21868788 ~ 21876333 (+)
AMCG00011396 NA coding downstream 18907 22669741 ~ 22691805 (+)
AMCG00011404 NA coding downstream 93687 22744521 ~ 22749846 (+)
AMCG00011405 NA coding downstream 101816 22752650 ~ 22785942 (+)
AMCG00011406 NA coding downstream 146644 22797478 ~ 22797829 (+)
AMCG00011407 NA coding downstream 147204 22798038 ~ 22798793 (+)
G106485 NA non-coding upstream 78771 22564099 ~ 22567261 (+)
G106481 NA non-coding upstream 91542 22554259 ~ 22554490 (+)
G106479 NA non-coding upstream 98625 22547164 ~ 22547407 (+)
G106477 smad1,smad5,LOC107598346 non-coding upstream 101597 22544184 ~ 22544435 (+)
G106478 NA non-coding upstream 101960 22543279 ~ 22544072 (+)
G106513 NA non-coding downstream 41903 22692737 ~ 22694844 (+)
G106586 NA non-coding downstream 211774 22862608 ~ 22862952 (+)
G106588 NA non-coding downstream 278295 22929129 ~ 22935544 (+)
G106607 NA non-coding downstream 556412 23207246 ~ 23207477 (+)
G106609 NA non-coding downstream 702794 23353628 ~ 23355643 (+)
G106242 NA other upstream 2278809 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 2306707 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 2483066 20095229 ~ 20162966 (+)
G105916 NA other upstream 3423611 19222055 ~ 19222421 (+)
AMCG00011328 NA other upstream 3528663 19107273 ~ 19117369 (+)
G106613 NA other downstream 690474 23341308 ~ 23341765 (+)
G106618 NA other downstream 705228 23356062 ~ 23356559 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 1097840 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 1184985 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 2957152 25607986 ~ 25662179 (+)

Expression


Co-expression Network