AMCG00011398


Basic Information

Item Value
gene id AMCG00011398
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22738678 ~ 22743075 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011398
GTCCTGCAGCCAGTCCACCACAGCATTCATTTGCTCGTCTCGGCACGTCCCCGTCGTCGGTAGGGCCCGTTCGTCGCCCTTTGTGCGCGGCTCGGTGTGTGAGGCCAGCGGCGCGGAAGCGCTCCGCACTTGACAGGAGACTCAAGATGGCAGGGCGCGTCGGTCGAGCTGGACGTGTCCTGGGGGATGAGCCCCGTCCTGAGCGGTGCCAGCGGGTTTCATGTGCCCTGGTTCCGTCGGCAGAAATGAAAGACCCCAGCCGCAGCAGCAATACTCCCAGCATAATCAGCGATGACATGATCATCAATGGACAATCCCATGATGAGGATAACCCATTTGCAGAGTACATGTGGATGGAGAATGAAGAGGAGTTTAATAGACAGATGctggaagaagaagaggaacaTGAGTGGTTCATTCCTGCCCGAGATCTTCCACAAACCATTAACCAGCTGCAGGACCAGCTCAATGGATTGGTCATCGGCGATGGTGGTGTTCGAGAAGAACTGGTGGTCAACAGTAATTTGAACCCCAATGCAAAAGAATTTGTACCTGGTGTTAAGTACTGAATCGAGGCCTCTTGGTGGACGTAGCACAACCTCCACACTGTGAAGCCAGTATTAGATTAATTGTGGAAGCTTCTTTGTCACTGTGTTACACTTAATGCATTGCCAAAGTTTTCAGTTAGTCTTGCATGCTTAGTGCTGGGACTGTTATATCAACGAAAGTGTTTATGAGCTGaaagttcagtttttttgttttttatggggggtggggggtatgtTGAGACTGGAGTAAGAGGCACCGTTCAAACTAAATGGTGGTACTTGTACAAACAATGGGAAATTTGTTTCCCCTCTTATCTTGTTGTTGCCTTAATGTAAACCATTTCTCTGTAAACCCTTTTGTTAGTCTTGTGAAATTGCTTTGACTGCTGTAACATTTGAGATGTCCACTGTGTTTGTGAAGGCATCTCCTTAACATGCTCTGCCCCCATATATAATTCCAAATGATAATCACAAAAGCTGCAATAGAGTGGATTtgactttttgttatttttaatgtctagTTTTGGGATTCTTTAAAAGGGAAAGTAAAAACCTTCATGTTTTACAGAGGCTGGGATTACAAAAGTTATCTTTGTGACCATTGTAAGCTTTAAGGGAAACTCAGCTATTTCTTTACTGCCAGTTTGAGTATTTggagaatttaaaaacaaattgcttgAGTGAATATCATACCTGAAGTAAGTTTTTCAATACCTTGAAAATCATTACTTGATGTTCATTCTGTGATATTTGCTTCTcactattttgtgtattatgcgttttttggtttttaatttttgaagcaataagagatgcattttaatttttttttttttttttttatatattgttttgctcTGTTTGAATGCAGTACCtaatggtgggggggggtgggaaaTCGGGCTGTTTCTGCTAAAAAGGTGGAATTGGCATGACTTTCATAGTTTCTAGAAGTGGGAAAGGTGCAATGGAGACATTGTTGCATTAACTTGAGTGGTGCCTCTAACTTTATTtttgctctttatttttctcaatttttaaataaaactgctcAAAAAATATTAAGGATAAATCCGATTGAATCGTACATCTTGTATCCCTGGCTTTATTTTTTGAGCAGTTTATAGGAAACACTACATTGGGAAGTCTACAGcacagcattttcattttttaatcctttctctccctcttccctcccCACCCATCTATCAGAACGTGGTAGTTTACACTGCCACATATGTTGAATGTGaatagtgtttaaaaaaacaaaacgcaagaaaaaaaaaaaaaaagaaaatgaaaaatattgtaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011398 True 1865 mRNA 0.41 4 22738678 22743075

Neighbor

gene id symbol gene type direction distance location
AMCG00011400 NA coding downstream 43851 22694141 ~ 22694827 (-)
AMCG00011393 NA coding downstream 137895 22564099 ~ 22600783 (-)
AMCG00011386 NA coding downstream 1524048 21161329 ~ 21214630 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding downstream 1584876 21135426 ~ 21153802 (-)
AMCG00011383 mgat4b,LOC106604568,LOC107550986,LOC107745197,LOC107733437 coding downstream 1663902 21064143 ~ 21074776 (-)
AMCG00011401 NA coding upstream 37612 22780687 ~ 22790227 (-)
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding upstream 196665 22939740 ~ 22949010 (-)
AMCG00011412 g3bp1,LOC107567204,LOC107662011 coding upstream 597925 23341000 ~ 23345841 (-)
AMCG00011413 sparc,LOC105030028 coding upstream 607834 23350909 ~ 23361150 (-)
AMCG00011415 mtnr1al,LOC107664734,LOC105906227,LOC107598318,LOC107741107,LOC103391067 coding upstream 755751 23498826 ~ 23508364 (-)
G106527 NA non-coding downstream 41832 22696587 ~ 22696846 (-)
G106509 NA non-coding downstream 85020 22650500 ~ 22653658 (-)
G106454 NA non-coding downstream 810311 21926853 ~ 21928367 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding downstream 863552 21874812 ~ 21875126 (-)
G106448 LOC106604502,LOC105008787 non-coding downstream 938752 21795625 ~ 21799926 (-)
G106547 NA non-coding upstream 16459 22759534 ~ 22761316 (-)
G106587 NA non-coding upstream 119533 22862608 ~ 22862952 (-)
G106601 NA non-coding upstream 351216 23094291 ~ 23097328 (-)
G106603 NA non-coding upstream 433405 23176480 ~ 23176756 (-)
G106604 NA non-coding upstream 433782 23176857 ~ 23177129 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other downstream 184541 22542649 ~ 22554137 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 2870776 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 3325663 19410368 ~ 19413015 (-)
G105890 NA other downstream 3633409 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 4547483 18180646 ~ 18191195 (-)
AMCG00011399 NA other upstream 355 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 310238 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 650029 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 1070782 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 1086222 23829297 ~ 23835074 (-)

Expression


Co-expression Network