AMCG00011399


Basic Information

Item Value
gene id AMCG00011399
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22743430 ~ 22753616 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011399
ATGTCATCCCAGTCATCCCTGGAAGCTCTGTACGGGGGATCTGctctgtcaatcTGTTTGCACTGCTCTTTAACCCTGGCCAACACGCTGTTCCTCTTGGAGGTAATCTCCCTCAGCATGTACTGCTCATCCTCCTGCAGCCTCTTCTGGAGCTCTCTGAAGTTCTGTGATGTGAGCTTGGGAAGCTACAGCATGATTCCTGTGGCACCCGAGgacactgcaggacacacagacacagcattGGTCTTCCCTGCAGTAGAATTCCAGCGCCTTGCCGTGCTCAGCACACTTCCTGTTGGAGAAGGTGGTCAGCGGGTCAACCAGCCTGTGCTCCCTTGGGTTGAGCTTAGTGAGACCCCTCCTGCAGAAATGAAAGACCCCAGGCCTGGCAGCAAGCCCCCCAGCCCGGCCCACGACGAGGGGCTCAGTAATGGACAACCCCgcgatgaagatgatgatgatgacaaccCGTTCGCAGAGTACATGTGGATGGCCGATGAAGAGTTCAATTGCCAGaaacactTCTAA
>TU133286
TTCAGGGCAGATGTGGGTCATTTAGCAATAGGTTgacaaaatgcacattaaataaGATTCTCATTGAAGAACCAAGCAAATAATTGTCATTTGTCAATTTTCTGTTTGGGTTTGGtatgcaaatatgaatgtatgaattACAGTAGGGCAGTGTATGCATCTTGCATGTAAACGACATACTCACCATGTTTGAATGCACATCGAAATCACAAAGAGAGCACACGTGGGGAAACATTACGGGCATTTCTCCATGGAAATCCCGAACCTTGCCAGGTGAGGGAGAGCCCACCCTCTTCTGCATTAACAAACTCTCAGACGCCCGCGGAGGACCCATCCGCAGACTGTCTAAGCCGTAGTTATCGTGAGAAAGATCAGAATAGCGGCGATCTCTGCCACCCCCCTCGGAATAGTCTAATCTGTCGAAACCTCTGGACTGGCTCTCCTGCACCTGACCGTAACTATAGTCAACTCCTTGACTGCGGCCAGATGATTCCCCCAGTGAACTGGTCGGCCTAACGTGCCTCATGTCATCCCAGTCATCCCTGGAAGCTCTGTACGGGGGATCTGGTAAGAGAGGTGGAAAGTCTCTGGTCTCATTCACACGGCGATTGCCTTGCCCCTTTCTCGTCTTAAGCTGCATGATAAGATGGGGCAAAGTTTCCACACTGATGTTATCCTCGGGAATCTGGGCCAGTGCGTCCAGGTCTTTGGGCGAGAGACCCAGACTAACAAAGAGTTTCATGGCGTTGTCAATGTTTCCAGGATGCTGGGAGGGATAACAGTCTTGGCCTTTGTTGTCACCCCCTAAAGGGGACATCATGCTATTACAGGGCCTTGAAGTTGAAGGGTAGAAACTGCGGGAACGCTGCTCGCTCATGCTGAAATTCAGAGACTCTGCAGCAGCAAGGAGCCCTCGTCCTGCAGTAAAGCCTTTGTGAGCACTGTCAGATGGGTTCTTCTGGGACATTGCCAGAcaaagtattgtattgtagcACAACAGTAAAATGCTCAAGATTGAAACAAAGCTATGGACTATGAAGTCTCCAGGGAAAAAGTCAAGTAAGTGGAAGTCAACTGAAAGTGTTAAAAAGTCTAAATGAACTTAGCAACAGGAGGACTCCTCTTCTGTGATGGTATCAAAATGCTAGCTCTATTGTGCGAGATTTCCCTGctactcctcttcctccacctTCGCTGCAACACGAACGAGGCAGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011399 False 528 mRNA 0.55 5 22743430 22753092
TU133286 True 1217 lncRNA 0.48 2 22750482 22753616

Neighbor

gene id symbol gene type direction distance location
AMCG00011398 NA coding downstream 355 22738678 ~ 22743075 (-)
AMCG00011400 NA coding downstream 48603 22694141 ~ 22694827 (-)
AMCG00011393 NA coding downstream 142647 22564099 ~ 22600783 (-)
AMCG00011386 NA coding downstream 1528800 21161329 ~ 21214630 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding downstream 1589628 21135426 ~ 21153802 (-)
AMCG00011401 NA coding upstream 27071 22780687 ~ 22790227 (-)
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding upstream 186124 22939740 ~ 22949010 (-)
AMCG00011412 g3bp1,LOC107567204,LOC107662011 coding upstream 587384 23341000 ~ 23345841 (-)
AMCG00011413 sparc,LOC105030028 coding upstream 597293 23350909 ~ 23361150 (-)
AMCG00011415 mtnr1al,LOC107664734,LOC105906227,LOC107598318,LOC107741107,LOC103391067 coding upstream 745210 23498826 ~ 23508364 (-)
G106527 NA non-coding downstream 46584 22696587 ~ 22696846 (-)
G106509 NA non-coding downstream 89772 22650500 ~ 22653658 (-)
G106454 NA non-coding downstream 815063 21926853 ~ 21928367 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding downstream 868304 21874812 ~ 21875126 (-)
G106448 LOC106604502,LOC105008787 non-coding downstream 943504 21795625 ~ 21799926 (-)
G106547 NA non-coding upstream 5918 22759534 ~ 22761316 (-)
G106587 NA non-coding upstream 108992 22862608 ~ 22862952 (-)
G106601 NA non-coding upstream 340675 23094291 ~ 23097328 (-)
G106603 NA non-coding upstream 422864 23176480 ~ 23176756 (-)
G106604 NA non-coding upstream 423241 23176857 ~ 23177129 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other downstream 189293 22542649 ~ 22554137 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 2875528 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 3330415 19410368 ~ 19413015 (-)
G105890 NA other downstream 3638161 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 4552235 18180646 ~ 18191195 (-)
AMCG00011409 NA other upstream 299697 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 639488 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 1060241 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 1075681 23829297 ~ 23835074 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other upstream 2258589 25012205 ~ 25018332 (-)

Expression


Co-expression Network