AMCG00011400


Basic Information

Item Value
gene id AMCG00011400
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22694141 ~ 22694827 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011400
ATGTATGGCTCCATCCTCTGCCTCATGTTCATCAGTATTGACCGCTACATCTCACTGGTCCACCCCTTTTCGGCAAAGAGTTTCAGGAGCAAAAAGCTGGCCATCTCAGTTAGCATCATGACCTGGGCGATCGCAGTCGCTGCAATGGTGCCGTTTGTTGCAATAAAACAGTCTTACCACATCAACAACACCAGCATGATCACCTGCCATGATGCTCTACCAGCTGATCTGAAGACTAACCTCTTTGCCTACTACTTCACATCTCTGACTGCTTTTGGATTCATCCTCCCTTTCCTCTCCATCTTAATCTGCTATGTGTCCATAATATGCTCACTGTCTCGACAGGAGAAGCCTTTTGCCCGAACTGTGAAGATCTGTGCTATAGTACTGACTGTTTTCATGGTGTGCTACATTCCCAGTCATGTCATTCTGCTGCTCCATTACAACAGAGATCAAGTCCTCCAGGACAGTCGCCTGTACCGGCCCTACATGGTCAGCCTAGTGCTCAGCACTTTCAACAGCAGCATCGACCCTTTCCTGTACTTGTACGTGTCAGATGACTTCAGAGTCAAAGTGAGGGAGGCACTGCGTAGGGTTACAGCTCGAGGAAGCCTCCAGGGATCAGAAAGAACAGAGCAGAGCGTGTCATACAAGACTAAGTCTGAAGAATTGAGTCTAAAAGCTTAG

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011400 True 687 mRNA 0.48 1 22694141 22694827

Neighbor

gene id symbol gene type direction distance location
AMCG00011393 NA coding downstream 93358 22564099 ~ 22600783 (-)
AMCG00011386 NA coding downstream 1479511 21161329 ~ 21214630 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding downstream 1540339 21135426 ~ 21153802 (-)
AMCG00011383 mgat4b,LOC106604568,LOC107550986,LOC107745197,LOC107733437 coding downstream 1619365 21064143 ~ 21074776 (-)
AMCG00011385 mgat4b,LOC106604568 coding downstream 1645892 21032802 ~ 21048249 (-)
AMCG00011398 NA coding upstream 43851 22738678 ~ 22743075 (-)
AMCG00011401 NA coding upstream 85860 22780687 ~ 22790227 (-)
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding upstream 244913 22939740 ~ 22949010 (-)
AMCG00011412 g3bp1,LOC107567204,LOC107662011 coding upstream 646173 23341000 ~ 23345841 (-)
AMCG00011413 sparc,LOC105030028 coding upstream 656082 23350909 ~ 23361150 (-)
G106509 NA non-coding downstream 40483 22650500 ~ 22653658 (-)
G106454 NA non-coding downstream 765774 21926853 ~ 21928367 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding downstream 819015 21874812 ~ 21875126 (-)
G106448 LOC106604502,LOC105008787 non-coding downstream 894215 21795625 ~ 21799926 (-)
G106340 NA non-coding downstream 1741286 20951760 ~ 20952855 (-)
G106527 NA non-coding upstream 1760 22696587 ~ 22696846 (-)
G106547 NA non-coding upstream 64707 22759534 ~ 22761316 (-)
G106587 NA non-coding upstream 167781 22862608 ~ 22862952 (-)
G106601 NA non-coding upstream 399464 23094291 ~ 23097328 (-)
G106603 NA non-coding upstream 481653 23176480 ~ 23176756 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other downstream 140004 22542649 ~ 22554137 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 2826239 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 3281126 19410368 ~ 19413015 (-)
G105890 NA other downstream 3588872 19102293 ~ 19105269 (-)
AMCG00011316 LOC107664359,LOC107560145,LOC108427843,LOC107752026,LOC105007072,LOC103354679 other downstream 4502946 18180646 ~ 18191195 (-)
AMCG00011399 NA other upstream 48603 22743430 ~ 22753616 (-)
AMCG00011409 NA other upstream 358486 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 698277 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 1119030 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 1134470 23829297 ~ 23835074 (-)

Expression


Co-expression Network