AMCG00011401


Basic Information

Item Value
gene id AMCG00011401
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22780687 ~ 22790227 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011401
aGAATTTGATATCATCTCTGAAGAGGAAGTCCTTCAGCTTTTAAGGTTATTCTCCCATTTCTTTTCACAGTTGATGTACACTTTTGGACTCTCGGGGAAAAGTGTTCTATTGCGTCATTGTAAACACACGTACatatataagtaaatacatttatacactttTTTATCCCAGATTAAATCATCTCGTTTCTGAAATGTCAGAGAATCTCCCCCTGGGTAGTGATCAAGAAGCTTTTACAGCCGGACACAGTGCCCCTGTTGTTTCAGAGGCTTCGAGTATGGAAGTGGGTGAGCATCAGGCCCAGAATGTCTTCCCTGAGACCCCTGGGCCGTCGCACAGCACTGTGCCTGTGGATGTTGCTGGCAAAGACCAGGATCCATGTCCTGCACAGAGTTCTGGAGATACAGCAGAGGCTCTGAACTTGTATGCCACTCTCGGGCTGTCGCCTGAAGACTTGGATGCCCTGGCACAGATTCCAGAAAATAAGATCAGTGTGGAAACATTGCCCCACCTTATCATGCAGCTGAAAGCAAAGAGAGCTGCAGGGGTTCGACCATCGGACCCCCCCAGACAGCAGACTTCACCTTCTCCAAGAGAGAAGCCGTACAGATCTCCACGGGAGGACTGGGAGGACGCCAGGCCGAGTAGTAGGCCTCCTAGATCTGCCAGTAAATCTCCTGTGAGCAGCTACATGGTTGACTACAATTATGGTAAATATGGGCGAGAAGAGCACACAGACAGAATGAGAGGCAGTAGAGATCTGCGTTATTCTAAGCCGTCCCACAAGAGGCATTTTATGGAGAGCAGACCCAGATCTCCGTCGACATTCCAGATTGAAGATTTTCACGGATTAATGCCCCGTAGTTTTCCATACGTGTGTTCGCTTTGCGATTTTGAAGTAAATTCAAGCAGggCCTGGAGTCAGCATATCAATGGAGTCCGACATGCAGAGAGTCGCCGTGACCTCCTTCGTATGTATCCCCAATGGGACCCACAATTTGTTTCAAGCAGAATGCCGGAGTCGTATCCTCCCCGTGATGCTCTGCCCCCTGGCCGAGGCTCTCGGTCATCTGCTCCACCGAGGAGACCGTACAGCACCGACCGCAGCACAGGTGAAAGGCCTACACTACCCCCTGAAGGACGCCCCTATATGAAACCAAAGCCAGGAACCAGAGTGGTGGTCTCTAAATTCCCAAAAGGCAGCATTGAAGTGAAGGATTTGCTGGAGTTGGCCAAACCCTTCGGGTCTGTAGTAAAACACTTGGTCTTCCCATGCAAGGGTTTCCTGGAAATGTCCACACACAAAGAAGCAGCAAATATGGTCGATCACTACAAACATAGGCCAGTCTTTTTGAAAGATATCAAGTTGTTCCTGTATCTGTCCCCTGTAGTTGAGAGTATTAAGACCCCGAGGCTGGATGTTCCTGAAAAGCATTCGAAGAGTCGAGGCTTTGCAGTCGTCTGTTTCTCTCACGTTCCGTCGGGAAAGGACGCGGAGTCTGAGGTCATTGATGTGGCCAAGCTGTTTGGGGAAGTGCATTACTCCAAATTTTCAACAAATGAGGCTCTTGTTGAGATGGCAGACCCTGAAGATGCGGAGATCATGGTGAAGTACTATGGTTCAAATCCACTCAAGATGAATGGGAAGAGTGTGAAGGTGAAAATGTGGACAACGCACAAGAGGCTCAGGATGAGTCCCGACTCTGCGTCTTCAAGAAGAGGGGAAACGAGCAAAAGACACAACAGCAAACCGAAGAGTGAAGAAACCTCCAGAAGCTCTCGATCCGGAAACAAAGAGGGAACGTCTGCACAGTGGGAGGCCACGGAGAATAAGGAAGAGCTCGCTGGAGAAGAGGAAAAAGCTGGAGACGAACAACCGCCTGACACTAAGGAGACTGGTGAGATGGAGGTGGAAAGTGAAGGAGATGCGGGAGGGATAGGTGTAGAGGAcgaggaggagaaggagcagcagcagcagcagcaggaggaggaggaggaggtggtggaggaggaagaagaggacaatgacaacaacacaaaGGAAGAGTCGGCCCAAGACGTCGTGACTTCAGTGACTCCTGGAGACGAGCCCGCAGAGACACCAGTGGAGGCAGAAGCAGAGGCAGCTGAAGCCAAATCCTCCGAGAGTCTGGACACTGCGCTGGAACAGAACACGGAGGAGAAAGCCCTGGAAAACTGTGAGGCGCCCAGAGACGATTCAGAGGAGAGACCAGCGGAGAGTTCACACCCCGAGGAGACACCAGAGGTCCAGTCCCAAAAGGAGGAGTTAGTAGAGGGAGAAAAACAGTTACCAGGAGACAAGGAGCCAGCAGAACCAAGTGTCTGTGATGAGGAGGACATGGAGGAAATGGACTTCCCAGAGAGTATGGAGGATTTCGTTACATTAGACGAGCTGGATGAAGATGCTGAAAAATCAAATCTATCAGACACTGAATCAGGAACTTCATCTTCCAGACACCTACACAAGTCTATCAAGGGGGGGAGAGTTGTTACtgttaaagattttaaaagggGCTATGGCTTTGAGAAGGACATTCTGCAGCTTGCCAAGCCTTTTGGGAAAGTTACTAACTATATGATGCCATACCACAAAAATGAGGCACAACTGGAACTACCAACTGACGAGGCGGCGAGTGAAATGGTGGATTTCTACAGAATAAGCAAGATGGCGCTGGTGTGCGGCAGACCCGTCACGGTGATCCTGTGCCAAGAAAAGCAAGAACTGGAGCGCCCAAGTGGAAGATCAGTCTATATCAGTCGGCTCCCATTTCAGAAGTTCTCGGATTCCTCTCTCTTAAATATCGCGCAGCCTTTTGGGAAGGTCACTGCCTACTCCTTAAACTGGACTCGCAAAAAGtgtttcattCAAATGGAAACAACCGAATCTGCTAGAAGAATGGTAAAGGCGTATATGCAGCACCCACCGGAATTTTATGGACGATTGTTGCAAGTTTATTTGTGCAAAAAGAGTGACACGCGTATACCATGGAAGACACCTCCTTATGAGACGGATAAGAAGAAGCAAAAGAGAGAGCGCACAGAGAGCAGtaagagtgaggaggagaatccCAGCAGCTCTCAGACTGGAGCCAAGAGCAAGGAGGAGGGACCCCCCGTGAAAAAGCCCTGCAAACCAGAGGAGCAGGGAGAGGCGGCAGACATGAGCACTGATGCCAGTCAGgaCCTTGTTCAAAGCACTGTGTCACACAATGAGGCTGCAGCTCCAGCTGGTGAGACGAGTGAAGCAGATCTCGGGGAGCAGATGGAGTCTGGAGATGCCTCCTCAGACCGAGTGAACGACCGGGTCAGTGATGAGGAGGAGACTCCCAAAACAAGAGCCCAGCCGGAGAGTCTGGGGCCGTACCAGCCCAACGTCCCAGTGGGAATGGAATATGTCGTCCCAAAGGTTGGCTACTTTTGCAAACTCTGCAATCTCTTCTACACAAATGAGAAAACGGCCAGAACCACCCACTGCAGCAGCCTGCCACACTATCAGAAACTGAAGGAGAAGATGGATGAAGGCAAAGACGATTCTGCCCAATGAGGAAGTGAGAGAGGGGACCCCACAGAAGAGAAATGTTTGTTAGCTTACCTGCCATGCTGCCTTGATGTTAAAATCGGTGTATACAAATtcagacatttttgtttgttttttatgttcaaCGGTGTGTTAAGGGATTTTATGCAGTCTGCACATTCAACAGCCTGGTGAGTGCAGTAACGCTGTATCTTTTGCTTCATTTTAGTGTCCATGCTATAGTTTaccatatttttttgcatatttcaaatACTGACTTGTAACCAATTATCCAATAAATGTTTATCATTTCTGTCTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011401 True 3861 mRNA 0.49 20 22780687 22790227

Neighbor

gene id symbol gene type direction distance location
AMCG00011398 NA coding downstream 37612 22738678 ~ 22743075 (-)
AMCG00011400 NA coding downstream 85860 22694141 ~ 22694827 (-)
AMCG00011393 NA coding downstream 179904 22564099 ~ 22600783 (-)
AMCG00011386 NA coding downstream 1566057 21161329 ~ 21214630 (-)
AMCG00011382 tbc1d9b,LOC108438817 coding downstream 1626885 21135426 ~ 21153802 (-)
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding upstream 149513 22939740 ~ 22949010 (-)
AMCG00011412 g3bp1,LOC107567204,LOC107662011 coding upstream 550773 23341000 ~ 23345841 (-)
AMCG00011413 sparc,LOC105030028 coding upstream 560682 23350909 ~ 23361150 (-)
AMCG00011415 mtnr1al,LOC107664734,LOC105906227,LOC107598318,LOC107741107,LOC103391067 coding upstream 708599 23498826 ~ 23508364 (-)
AMCG00011421 NA coding upstream 728574 23518801 ~ 23561929 (-)
G106547 NA non-coding downstream 19371 22759534 ~ 22761316 (-)
G106527 NA non-coding downstream 83841 22696587 ~ 22696846 (-)
G106509 NA non-coding downstream 127029 22650500 ~ 22653658 (-)
G106454 NA non-coding downstream 852320 21926853 ~ 21928367 (-)
G106453 LOC103471465,LOC102309231,LOC102203450,LOC107738605 non-coding downstream 905561 21874812 ~ 21875126 (-)
G106587 NA non-coding upstream 72381 22862608 ~ 22862952 (-)
G106601 NA non-coding upstream 304064 23094291 ~ 23097328 (-)
G106603 NA non-coding upstream 386253 23176480 ~ 23176756 (-)
G106604 NA non-coding upstream 386630 23176857 ~ 23177129 (-)
G106606 NA non-coding upstream 387001 23177228 ~ 23177579 (-)
AMCG00011399 NA other downstream 27071 22743430 ~ 22753616 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other downstream 226550 22542649 ~ 22554137 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 2912785 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 3367672 19410368 ~ 19413015 (-)
G105890 NA other downstream 3675418 19102293 ~ 19105269 (-)
AMCG00011409 NA other upstream 263086 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 602877 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 1023630 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 1039070 23829297 ~ 23835074 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other upstream 2221978 25012205 ~ 25018332 (-)

Expression


Co-expression Network