AMCG00011408 (cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109)


Basic Information

Item Value
gene id AMCG00011408
gene name cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 22939740 ~ 22949010 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011408
ATGGGGAAGATGCTTggtggagaggaggagaaggaccCCGATGCCcagaaaaaggaagaagaaagacaGGAGGCTCTGAgacagcaggaggaagagaggaaggcCAAGCACGCCCGCATGGAGGCTGAGAGGGAGAAAGTACGACAGACCATCCGTGACAAGTATGGCCTGAAGaagaaggaagagaaagaggcCGAGGAGAAGGCCGCGATGGAGCAGCCGTGCGAGGGCTCATTGACACGCCCCAAGAAAGCCATTCCTGCCGGCTGTGGagacgaggacgaggaggaagaggaaagcATCCTGGACACTGTGCTCAAGTTCCTGCCAGGGCCTCTGCAAGACATGTTCAAGAAGTAA

Function

symbol description
cplx2 Predicted to enable SNARE binding activity. Predicted to be involved in regulation of neurotransmitter secretion and synaptic vesicle exocytosis. Predicted to act upstream of or within exocytosis and neurotransmitter transport. Predicted to be located in synapse. Predicted to be part of SNARE complex. Predicted to be active in terminal bouton. Orthologous to human CPLX2 (complexin 2).

NR:

description
complexin-2

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
K15294 CPLX1_2; complexin-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011408 True 360 mRNA 0.56 2 22939740 22949010

Neighbor

gene id symbol gene type direction distance location
AMCG00011401 NA coding downstream 149513 22780687 ~ 22790227 (-)
AMCG00011398 NA coding downstream 196665 22738678 ~ 22743075 (-)
AMCG00011400 NA coding downstream 244913 22694141 ~ 22694827 (-)
AMCG00011393 NA coding downstream 338957 22564099 ~ 22600783 (-)
AMCG00011386 NA coding downstream 1725110 21161329 ~ 21214630 (-)
AMCG00011412 g3bp1,LOC107567204,LOC107662011 coding upstream 391990 23341000 ~ 23345841 (-)
AMCG00011413 sparc,LOC105030028 coding upstream 401899 23350909 ~ 23361150 (-)
AMCG00011415 mtnr1al,LOC107664734,LOC105906227,LOC107598318,LOC107741107,LOC103391067 coding upstream 549816 23498826 ~ 23508364 (-)
AMCG00011421 NA coding upstream 569791 23518801 ~ 23561929 (-)
AMCG00011424 NA coding upstream 661719 23610729 ~ 23611511 (-)
G106587 NA non-coding downstream 76788 22862608 ~ 22862952 (-)
G106547 NA non-coding downstream 178424 22759534 ~ 22761316 (-)
G106527 NA non-coding downstream 242894 22696587 ~ 22696846 (-)
G106509 NA non-coding downstream 286082 22650500 ~ 22653658 (-)
G106454 NA non-coding downstream 1011373 21926853 ~ 21928367 (-)
G106601 NA non-coding upstream 145281 23094291 ~ 23097328 (-)
G106603 NA non-coding upstream 227470 23176480 ~ 23176756 (-)
G106604 NA non-coding upstream 227847 23176857 ~ 23177129 (-)
G106606 NA non-coding upstream 228218 23177228 ~ 23177579 (-)
G106665 NA non-coding upstream 568368 23517378 ~ 23517803 (-)
AMCG00011399 NA other downstream 186124 22743430 ~ 22753616 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other downstream 385603 22542649 ~ 22554137 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 3071838 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 3526725 19410368 ~ 19413015 (-)
G105890 NA other downstream 3834471 19102293 ~ 19105269 (-)
AMCG00011409 NA other upstream 104303 23053313 ~ 23060966 (-)
AMCG00011414 NA other upstream 444094 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 864847 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 880287 23829297 ~ 23835074 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other upstream 2063195 25012205 ~ 25018332 (-)

Expression


Co-expression Network