AMCG00011409


Basic Information

Item Value
gene id AMCG00011409
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23053313 ~ 23060966 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011409
ATGACACGGTTACAAGCTGGCCAAGGATATAAAAACACCTTCCACTGCATCCTTAAAATCtaccaaaaagaaaatGTTTCTGGGTTCTTCAAAGGCCTGTCTTTCCCACTGGCCAGCATTACTCTCTATAACTCGGTGGTATTTGGCGTCTTCAGCAACACACAGCGGCTTATTAGCCAGATTCGCTATGGCGACGGGAGGCACCCTTCTGATATGTTGGACCTCACCCTGGCCAGCATGGTGACTGGCTTCATTTCTGTAGGGTTCGGGGCCCCGGTGGATTTGGTGAAAATACGGCTGCAGATGCAGACCCAGCCTGTTCTCGCAGAGAACTTGAACCTTGCTGGGGAGGTGCACCTCCGCACAGTTGGGATCCATCAGCAGGCACTGTACAGGGGACCTATTCACTGCATCAGCAGCATCCTACAGAACGAAGGGGTCCATGGACTTTACCGAGGAACTGGGGCCATGATATTCTTCCGCGGGGCTACAGTGAATGTTGTCCGTGGATTTCCCATGAGTGCTACGATGTTCCTTGGCTACGAACTCTCACTGAAGTTCTTCAGAGGTCTGTAAGCTGGGGTTATCCTCCCTGCGCCCCCATTGACATCACTCTTCTTCATGAGTGACATTTTCCCAGCATGCCAACTGTTTTTGTACATCTTCAGGAGTTTCCTGGACTATTGTGGATCATTTCACTTGTCATTtcacttgttattttcttatattaAGAAAGCACTTGTTTAAATTAGACAAAGACCAACATGTTTATAATGGTTAAAATGCCTGGATATACAgttacaaaaaagaaatgaagtAAATATATGATTACATTAATTGTTTTGCAAGAGCGTTCTTTATGAATGAAAAGGTAAAACTATATGAATATGAAAGCATGGCAATCACCCTGTACaaccaaaataatttaaaatatcttgtttaaataaaatgtgtgaatgCATATCAGTATTACTGTATTGATAGCactttataacaaaaaaaatagaataaacaatttgaatacttaactatatatattattttgtttaaggaaagatattttattaaatatttgtacatatgTTGCTGATCTTCCcagatttattaataataaagcatataTTGCTGCACTGTGTGTTATGTTAAAATTGCTAATTCTGAAATAGCAATGGGAAGCCTTAGCATTATTGCCTTTAAGCCAGGCTGTGTTGAGTATCTCTTGTGGTTTTAAAGAGCACGCTCTAATCTGAGAATAAGGTTCAAAATTGAAATTCTGATCAGAGAATGCAGATCAGCAGGGGGAGTGTATGACCGTGGAAAAGAGAGACTATCGTCCATATGCGCCAGACCATCTGTACTAGCTCTTACCACACTACAGCTCTGAATGTAGGCattgatattatttaaaaagtattttgttttggaaagggATTTCGATTTTTCTTTAACAACAGTATTGGTTGTCTTTTACTTTctttggcattttgttttttacagctATGTAAATGTTACctaataaaatcaatgtttgttcattttaa
>TU133362
CGGCTGGCGAGGCACTGTTGGCAGGTTATTCCTGCAATGTTGTGAAAACTCACTGATCATAGATGATCTTCAGACAGCAATACCTGAGCACTATTCAATCTCTGCCCCTCTCGGTGTGTGCCATAGCTAGGTGGCATCAATGATCTGATGTATTAGACTAAAAGGTCCTTTTTAAAAAGTTGGATTTGCAGCACGAAATGAACTGCTTTGATATAGATGACTTTCTAGCGGGATGGATAGGGGgaGCTTCCAGTGTTATTGTGGGACATCCACTTGATACTGTAAAGACACGGTTACAAGCTGGCCAAGGATATAAAAACACCTTCCACTGCATCCTTAAAATCtaccaaaaagaaaatAGAACTTGAACCTTGCTGGGGAGGTGCACCTCCGCACAGTTGGGATCCATCAGCAGGCACTGTACAGGGGACCTATTCACTGCATCAGCAGCATCCTACAGAACGAAGGGGTCCATGGACTTTACCGAGGAACTGGGGCCATGGTCATTAGGGACGTCCCAGGATATGCCCTGTACTTCATTCCTTACACCCTGCTCTGCAGCTGGATGACACCAGAGGGACACGCTGCGCCTCACCCTTGTTCCATTTGGCTTGCAGGTGGAATAGCAGGTTCCATCTCCTGGTTTACTGCCACACCAGCAGACGTATTGAAGAGTCGACTTCAAGCTGATGCACTTCACCAAAGAAAGTATAAAGGCATTGCCCACTGTATTTTACAGAGTTACAAGACAGAAGGCCTGCAGATATTCTTCCGCGGGGCTACAGTGAATGTTGTCCGTGGATTTCCCATGAGTGCTACGATGTTCCTTGGCTACGAACTCTCACTGAAGTTCTTCAGAGGTCTGTAAGCTGGGGTTATCCTCCCTGCGCCCCCATTGACATCACTCTTCTTCATGAGTGACATTTTCCCAGCATGCCAACTGTTTTTGTACATCTTCAGGAGTTTCCTGGACTATTGTGGATCATTTCACTTGTCATTtcacttgttattttcttatattaAGAAAGCACTTGTTTAAATTAGACAAAGACCAACATGTTTATAATGGTTAAAATGCCTGGATATACAgttacaaaaaagaaatgaagtAAATATATGATTACATTAATTGTTTTGCAAGAGCGTTCTTTATGAATGAAAAGGTAAAACTATATGAATATGAAAGCATGGCAATCACCCTGTACaaccaaaataatttaaaatatcttgtttaaataaaatgtgtgaatgCATATCAGTATTACTGTATTGATAGCactttataacaaaaaaaatagaataaacaatttgaatacttaactatatatattattttgtttaaggaaagatattttattaaatatttgtacatatgTTGCTGATCTTCCcagatttattaataataaagcatataTTGCTGCACTGTGTGTTATGTTAAAATTGCTAATTCTGAAATAGCAATGGGAAGCCTTAGCATTATTGCCTTTAAGCCAGGCTGTGTTGAGTATCTCTTGTGGTTTTAAAGAGCACGCTCTAATCTGAGAATAAGGTTCAAAATTGAAATTCTGATCAGAGAATGCAGATCAGCAGGGGGAGTGTATGACCGTGGAAAAGAGAGACTATCGTCCATATGCGCCAGACCATCTGTACTAGCTCTTACCACACTACAGCTCTGAATGTAGGCattgatattatttaaaaagtattttgttttggaaagggATTTCGATTTTTCTTTAACAACAGTATTGGTTGTCTTTTACTTTctttggcattttgttttttacagctATGTAAATGTTACctaataaaatcaatgtttgttcattt

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011409 False 1541 mRNA 0.39 5 23053313 23059457
TU133362 True 1830 TUCP 0.39 6 23053316 23060966

Neighbor

gene id symbol gene type direction distance location
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding downstream 104303 22939740 ~ 22949010 (-)
AMCG00011401 NA coding downstream 263086 22780687 ~ 22790227 (-)
AMCG00011398 NA coding downstream 310238 22738678 ~ 22743075 (-)
AMCG00011400 NA coding downstream 358486 22694141 ~ 22694827 (-)
AMCG00011393 NA coding downstream 452530 22564099 ~ 22600783 (-)
AMCG00011412 g3bp1,LOC107567204,LOC107662011 coding upstream 280034 23341000 ~ 23345841 (-)
AMCG00011413 sparc,LOC105030028 coding upstream 289943 23350909 ~ 23361150 (-)
AMCG00011415 mtnr1al,LOC107664734,LOC105906227,LOC107598318,LOC107741107,LOC103391067 coding upstream 437860 23498826 ~ 23508364 (-)
AMCG00011421 NA coding upstream 457835 23518801 ~ 23561929 (-)
AMCG00011424 NA coding upstream 549763 23610729 ~ 23611511 (-)
G106587 NA non-coding downstream 190361 22862608 ~ 22862952 (-)
G106547 NA non-coding downstream 291997 22759534 ~ 22761316 (-)
G106527 NA non-coding downstream 356467 22696587 ~ 22696846 (-)
G106509 NA non-coding downstream 399655 22650500 ~ 22653658 (-)
G106454 NA non-coding downstream 1124946 21926853 ~ 21928367 (-)
G106601 NA non-coding upstream 33325 23094291 ~ 23097328 (-)
G106603 NA non-coding upstream 115514 23176480 ~ 23176756 (-)
G106604 NA non-coding upstream 115891 23176857 ~ 23177129 (-)
G106606 NA non-coding upstream 116262 23177228 ~ 23177579 (-)
G106665 NA non-coding upstream 456412 23517378 ~ 23517803 (-)
AMCG00011399 NA other downstream 299697 22743430 ~ 22753616 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other downstream 499176 22542649 ~ 22554137 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 3185411 19865614 ~ 19867902 (-)
G105970 rps14,RPS14,rs14,LOC100194652,LOC107685488,LOC107588790 other downstream 3640298 19410368 ~ 19413015 (-)
G105890 NA other downstream 3948044 19102293 ~ 19105269 (-)
AMCG00011414 NA other upstream 332138 23393104 ~ 23489642 (-)
AMCG00011428 NA other upstream 752891 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 768331 23829297 ~ 23835074 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other upstream 1951239 25012205 ~ 25018332 (-)
AMCG00011465 NA other upstream 2956210 26017176 ~ 26019400 (-)

Expression


Co-expression Network