AMCG00011415 (mtnr1al,LOC107664734,LOC105906227,LOC107598318,LOC107741107,LOC103391067)


Basic Information

Item Value
gene id AMCG00011415
gene name mtnr1al,LOC107664734,LOC105906227,LOC107598318,LOC107741107,LOC103391067
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23498826 ~ 23508364 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011415
ATGGATGGGGGAAGCAGCCCTATGACAAACCTCTCCTCCGGCGGGGAGGGCGAGGATGGACTCCGGTTTCCCTGGGTGGTCACTTTGTTGGCCACCGTCCTTGTCACCACTATAGTTGTTGATATCTTAGGCAACCTTTTGGTGGTTATCTCCGTCTTCAGAAACAAGAAACTCAGGAAAGCAGgaAATGCCTTTGTGGTCAGTCTGGCTGTAGCCGACCTGTTGGTGGCCATCTATCCCTACCCACTGGTTCTCATGGCTATTTTCCATGACGGCTGGAGTCTGGGCTACATACACTGCCAGATCAGCGGCTTCCTAATGGGGCTCAGCGTTATTGGATCCATCTTCAACATCACTGGCATTGCGATCAATCGTTATTGCTACATCTGCCACAGCCTTAAATATGATAAGCTCTTCTCCAACAAGAACACCATTTGCTATGTCATCTTGGTTTGGGTCCTCACCATTCTAGCCATCATCCCCAACTGGTTTGTGGAGTCCTTGCAGTATGACCCACGGGTCTACTCCTGCACTTTCGCTCAGTCAGTCAGCTCTCTCTACACCATCACTGTGGTGGTTGTCCACTTCATTCTTCCCATCAGCATCGTGACTTATTGCTACCTCCGGATATGGATCCTGGTCATTCAGGTCCGGAGAAGAGTGAAGCCAGACAATCGGCCCAAAATGAAGCCCCATGACTTCCGAAACTTCCTCACTATGTTTGTGGTGTTTGTGCTTTTCGCTGTGTGCTGGGCTCCACTCAATTTAATCGGGCTTGCAGTCGCTGTGAACCCGAGACTTGGCCTTGCCATTCCCGAGTGGTTGTTCACTGCTAGCTACTTTATGGCCTATTTCAACAGTTGTCTGAATGCTGTGATTTATGGCGTTCTAAACCACAACTTCAGGAAGGAATACAGACGGATTGTAGTGGCCATTTTTAAACTACCTTGTTGA

Function

symbol description
mtnr1al Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within rhythmic process and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human MTNR1A (melatonin receptor 1A).

NR:

description
PREDICTED: melatonin receptor type 1A-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0048511 rhythmic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008502 melatonin receptor activity molecular_function

KEGG:

id description
K04285 MTNR1A; melatonin receptor type 1A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011415 True 954 mRNA 0.49 2 23498826 23508364

Neighbor

gene id symbol gene type direction distance location
AMCG00011413 sparc,LOC105030028 coding downstream 137676 23350909 ~ 23361150 (-)
AMCG00011412 g3bp1,LOC107567204,LOC107662011 coding downstream 152985 23341000 ~ 23345841 (-)
AMCG00011408 cplx2,LOC108417825,LOC107598352,LOC108269257,LOC107571714,LOC107664715,LOC107741109 coding downstream 549816 22939740 ~ 22949010 (-)
AMCG00011401 NA coding downstream 708599 22780687 ~ 22790227 (-)
AMCG00011398 NA coding downstream 755751 22738678 ~ 22743075 (-)
AMCG00011421 NA coding upstream 10437 23518801 ~ 23561929 (-)
AMCG00011424 NA coding upstream 102365 23610729 ~ 23611511 (-)
AMCG00011423 NA coding upstream 230412 23738776 ~ 23741793 (-)
AMCG00011422 NA coding upstream 234714 23743078 ~ 23749052 (-)
AMCG00011431 tspan17,LOC107680656,LOC107749748,LOC107594893,LOC107653321,LOC106612270 coding upstream 457755 23966119 ~ 23979763 (-)
G106606 NA non-coding downstream 321247 23177228 ~ 23177579 (-)
G106604 NA non-coding downstream 321697 23176857 ~ 23177129 (-)
G106603 NA non-coding downstream 322070 23176480 ~ 23176756 (-)
G106601 NA non-coding downstream 401498 23094291 ~ 23097328 (-)
G106587 NA non-coding downstream 635874 22862608 ~ 22862952 (-)
G106665 NA non-coding upstream 9014 23517378 ~ 23517803 (-)
G106682 NA non-coding upstream 82737 23591101 ~ 23591309 (-)
G106723 NA non-coding upstream 287316 23795680 ~ 23797219 (-)
G106817 NA non-coding upstream 1073592 24581956 ~ 24582174 (-)
G106862 NA non-coding upstream 1407800 24916164 ~ 24919197 (-)
AMCG00011414 NA other downstream 9184 23393104 ~ 23489642 (-)
AMCG00011409 NA other downstream 437860 23053313 ~ 23060966 (-)
AMCG00011399 NA other downstream 745210 22743430 ~ 22753616 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other downstream 944689 22542649 ~ 22554137 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 3630924 19865614 ~ 19867902 (-)
AMCG00011428 NA other upstream 305493 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 320933 23829297 ~ 23835074 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other upstream 1503841 25012205 ~ 25018332 (-)
AMCG00011465 NA other upstream 2508812 26017176 ~ 26019400 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 2998579 26506943 ~ 26516507 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_11479874_11503083 MTNR1B, MTNR1BB coding CI01000304 null 11479670 ~ 11503494 (-)