AMCG00011416


Basic Information

Item Value
gene id AMCG00011416
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23592543 ~ 23599212 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011416
CTCTCTAATAGTCAGTCATGCGTttaaaaagagagggagagaaagaaagaaagagagagaagaaatgaGCAACCCTTGCGTTTCACAACAAAGCCACTTCCtcttcaaaaaaaataaaaaaaataaccacaaCTGCAACAATAACAGCGAGTCCCAATGCCTGGCGCCGCCGCACTAAGAGATCTGCGCAGTTTTGCGTCGCTGTAGCGCAGCGCCTTCACTCCTGCGCCGCAacactgtccacagtatccacaATGAATACGGCGCCGGCCATTGCGATATCCCTGTGCGCGGTGTGCCTTTTCCTGCAACCGGGAGGATGTGAAATCGTCGTGAACAGATACGCTTCCAGATCTACTATGATCCTCGGCTTCTCCTGGGAGAACTGCGATGGAGCTGGACAGCCGGCCGTGCTGAAGAGTCTGGCTCTGTCCCCAGACCCTATAACCATCCCCGGGGACCTGAAAGCCAGTGCAGCCGGCTCTACTACTGTGGCCTTCACATCGCCGCTGGCGGTCAACCTGACCCTTGAAAAAGAGGTGGCTGGCTTCTGGGTAAAGGTGCCCTGTATGGATAACATTGGGAGCTGTGACTATGCAGATGCCTGCCTTCTTCTGGACACAGCGATTCCCCCTGGACAGGACTGCCCCGAGCCCCTGCACACCTATGGCATTCCCTGCCACTGTCCCTTCAAGGCTGGAGATTACACGTTGCCTGAGACAGATTTCTACTTGCCTAACGTGGACCTGCCCTACTGGCTGACAAACGGGAACTACAGAATTAAGGGAGTTCTTGGAATCAATGGGAAGGAACTCGGCTGCCTTAAAGTGACACTGTCTCTTCATTCTAACTAATGTTACAGGCAATGTGGTAGCAAAAACCATTCCTTGACATCCACCGAccagaaagattttttttttttgtatctttaaatCACTAAACGATTAAAATGTTAGTTTAGATCAATCAAGCAAGTATTTTGCTCACTCAAGTGATCAAGAGCTCaactggaatacattttttgaggACTGCAGCCCAGAGGCCAAAAATTACATTCTGGTGCACTTGCagttaaatacttaattttgtGTATTGAACGCTCATAATTAAGTGTTGGTCCTTACAATGCCGCTCTCTTGCAGATAATTGGCCACCACAATATCTCATACCGCCAACAGAGTCTGCAGGTATGGAGGTTTGTGCAGTCGTAAACCTCTGTGTGAAGGGTCGTAGCAAACCCCACTTTTATACATCTGCCTCCCACTAATCAACTAATTGAGTTCTTATGTCTGGCGTGTGTGGTTTTGTCAGTAAATAGTCgccttgtttttgaaaatgcaaatgtaccCCCTGCAAACTAGATATTAGCTAGCACTTGTTCCTTGCCTAGATGGACCCACAATCTGAGACAATTTCAGCCATGAGTCAGCTTGTCTTTTACGTTCTGCACTCTGTGCTCCAGGACCAAATGCTGCTGATCGTGTTTGAACTGTACAATGGAGCCCCTGTTCTCTGGGCACCTGTGTACCCATAATGCACTGCTGTGATATGTGGTGGTGGCCACTTTTCTCCTTCATTCCATGACCTAATGATTTTCGACTTGGTGAAATACTTTAATGGTACATTGAGATGTTGCTTGGGATGCCATTTtgggtttattttgtattcacttaggctatgttttaaaactttttagtttttattactTGAATGTAGCAGcttttaattagtaaattaataatttttatatattaacttAGTTCTAAAATGACTATAGAAATGGAGTTAATGTTGGATTACAATGGTACCATACAGTTAAGTATTTTTGATTTGCTTATCGTTGAGCACTGaatgtatatactgtaaattGGTTGTACATGAGTTTTAAGTAAATGACCTACAGCATTCTGAGGATTGTTCAGCTTTAGCCTGACTTGCCTGTAAAGTAAACTGAGTTTCAcagttcaaaatattttattttaaatattgttgtaATTTGTGAAAACAAAGAGTACATTAAAGTGTAACTTGCCAAATGTTTCACTTGAACTTGGTTTGCTGTACAATTTCCTTACTAGTCAGTACATACCCACTCACATTTTGAACATCATACTGCTGGATAATAAGTGTTTCCATTTCTTACAATCAAAATTATTTCATACTTTCCTTAAACAGGGTAGGAAATATGCTCAGGTTTTTAAATTGCACCTACAAATATACTTATAACTAATTTCCAACAATGTGTTCTACTTCAAGAACATTGTCCAACATTTTTTACATCTTTAATGTATCCCTTTGTGGGAAATaacaatttttaatttgattttattcaccCTAAATTCAGATCCTCTCTTAATTTGGaggatttattttgaagtttccttttcttttgtgcttTGTCTTCTGAGATTTATACAAATACACTAATGTAATCTGATTAAATCCAGTGGCACTGTTTGCCTTGTTTTATGAATAATGAATTTGACTGCTAATATGTAAAGCCTAATGCAATAAAACTTTGTCCCTGA

Function

GO: NA

KEGG:

id description
K12383 GM2A; ganglioside GM2 activator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011416 True 2528 mRNA 0.41 4 23592543 23599212

Neighbor

gene id symbol gene type direction distance location
AMCG00011417 LOC106612256 coding upstream 177401 23403856 ~ 23415142 (+)
AMCG00011411 glra1 coding upstream 271162 23288041 ~ 23321381 (+)
AMCG00011410 NA coding upstream 329705 23240188 ~ 23262838 (+)
AMCG00011403 thoc3,LOC102780803 coding upstream 753040 22835799 ~ 22839503 (+)
AMCG00011402 si:dkey-280e21.3,LOC107664720,LOC107662031 coding upstream 757716 22819761 ~ 22834827 (+)
AMCG00011419 NA coding downstream 23568 23622780 ~ 23623300 (+)
AMCG00011418 NA coding downstream 57458 23656670 ~ 23657442 (+)
AMCG00011420 NA coding downstream 63812 23663024 ~ 23677276 (+)
AMCG00011425 NA coding downstream 161077 23760289 ~ 23775508 (+)
AMCG00011426 NA coding downstream 187751 23786963 ~ 23813716 (+)
G106640 fat2 non-coding upstream 51815 23539365 ~ 23540728 (+)
G106631 NA non-coding upstream 70612 23382282 ~ 23521931 (+)
G106619 NA non-coding upstream 231529 23356734 ~ 23361014 (+)
G106609 NA non-coding upstream 236900 23353628 ~ 23355643 (+)
G106607 NA non-coding upstream 385066 23207246 ~ 23207477 (+)
G106718 NA non-coding downstream 230077 23829289 ~ 23833300 (+)
G106742 NA non-coding downstream 341800 23941012 ~ 23971183 (+)
G106863 NA non-coding downstream 1320639 24919851 ~ 24943678 (+)
G106871 NA non-coding downstream 1339810 24939022 ~ 24940823 (+)
G106874 NA non-coding downstream 1387626 24986838 ~ 24991237 (+)
G106618 NA other upstream 235984 23356062 ~ 23356559 (+)
G106613 NA other upstream 250778 23341308 ~ 23341765 (+)
G106242 NA other upstream 3225320 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 3253218 20296011 ~ 20339325 (+)
G106139 LOC108275110 other upstream 3429577 20095229 ~ 20162966 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other downstream 149462 23748674 ~ 23753002 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 236607 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 2008774 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 2756955 26356167 ~ 26360775 (+)
G107202 NA other downstream 3171226 26770438 ~ 26771214 (+)

Expression


Co-expression Network