AMCG00011422


Basic Information

Item Value
gene id AMCG00011422
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23743078 ~ 23749052 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011422
GACACAATGGCGTGTGACAAAGTGGTCTCATTCATCCGAGGCCTCGCTCGCAGGAAGCCCCTGGACCCCGAAGGCGAGGTGTCCAACTTCCGCCGCTGTCTGACCACCCTCGACTTGGTGGCACTGGGGGTGGGCAGCACGCTGGGAGCAGGAGTGTACGTTCTGTCTGGAGAAGTGGCCAGGGCAGTCGCTGGACCGAGCATCATCATCTCCTTCTTTGTCGCGGCCCTTGCCTCCATCTTCGCTGGGCTGTGCTATGCGGAGTTCGGTGCCAGGGTCCCCAAGACGGGTTCTGCTTACTTGTACAGCTACGTGACAGTTGGAGAAGTGTGGGCCTTCATCACTGGCTGGAATTTATTGCTCTCCTATGTGATAGGCAAGcagactgtttGTACCTCAAGTGTGGCTAGAGCATGGAGTGGGACATTTGATGACCTCATAGGCAATGTGATTGCTAATTATTTAGGCAAACATGCAGCCATGGGATTGCCTGGCCTTGCTGCTTACCCTGATTTTTTTGCAGCCGGTCTGATCATGCTGCTAGCAGGACTCCTTGCATTTGGAGTAAAAGAGTCAACAACAGTCAATAAGGTTTTCACAGGGATTAATATTCTGGTACTGTTGTTTGTCATTATTTCTGGATTCATCAAAGGCAATCTTGACAACTGGTACATCAGTGAAGAAACAATTCTGAATGCTACAGCACAGGCTGAAAACCTGTCTTCTGCTGCCAATGTGACGAGTGAGTTTGGGATTGGGGGATTTTTTCCGTATGGATTTGAAGGAACGGTAGCAGGCGCTGCAACCTGTTTCTATGCTTTTGTGGGATTTGACTGCATTGCAACCACAGGGGAGGAAGTGAAGAACCCTCAGAAGTCCATTCCTCTGGGAATTGTCATCTCCCTGTTGATCTGCTTCCTGGCCTATTTTGGTGTCTCAGCTGCACTGACCCTCATGATGCCTTACTACTTACTCAACGTCCATAGTCCCCTGCCTGTGGCCTTCACATACATAGGGTGGAATGCAGCCAAGTATGTTGTGGCTGTGGGCTCTCTGTGTGCTCTCTCTACCAGTCTCCTGGGCTCCATGTTTCCCATGCCTAGGGTCATTTTTGCTATGGCAAGAGATGGGCTGCTCTTCAAAACTCTGCGTAAGGTCAGTTCACGCCAGAGTCCTGTTGTAGCCACACTCGCCTCTGGAACTGTGGCAGCTATCATGGCCCTTCTATTTGACCTGAAAGCACTGGTTGACATGATGTCCATTGGCACTCTCTTTGCGTATACTCTGGTGGCTCTTTGCATTCTCATCCTGAGGTACCAGCCAGATTCAAATGAAGACAATTCAGACGACATCCAGAAACCAGAAAGCAGCTCCAAGTTTGCCTTTCTAAATCCACCTTCCAACCCGACCGCAAAGACCTCAACCATTGTGTCCAGCTGTGCACTATTAATAgTTCTCTTGGTAATTCTTTTGAGTGTCTTATTGACAAAAGGGATGCCATCCTTACTCCAAAGGGAAGCATGGAGCCTGGCTTGTTTGGTTATAATCCTTGtgataattacaattattgtcGTGATCATTTGGAGACAGCCCCAGTGTAAAACCAAAGCTGCATTCATGGTTCCCTTCTTGCCACTGCTCCCTGTGGTGAGTGTCTTTGTGAACATTTACCTGATGATTCAGTTAGGACCAGACACCTGGATCCGCTACGCTGTGTGGATGGCAGTGGGCTTCCTGATCTATTTCAGCTATGGTGTCCGGCACAGCGTCCAGAGGAAACGGCTCCGTATGCCACAGAATCAGATCGTTATTCAGACTATTGACAGCACAATGGAGGGAGATTGTGTGAAGGCTCCTGAACCAGATGAGGATGGGAATCAGAAAGCCCATGTTTCTTGATGAAGATGAAGAGGCAGCTGTGGAGACTTCTTCCCCTTTCACATAAGCTTTAAAAACTCAAAATTGAAATTACAGTTTTCGGAAAACCACAGTGAGGTGTTTGAAAATGACATTGATAATGAAAACTACATTCACCgtacattcaaacaaaaaaagcaaactaGGATATACATTGCACTGTGAATTTGTAAGCAAATGTGAAATGGATTTTTATACTGGGTTTATTGGAGGGATCTTAACAATGTTTACAACTAATGAAAAaatgtctgtatatttatagaactgtagatgttttataatgtttgaaAAAACATAAACTGCAGTagataatgatatatatatatacatatatatatatatatatatatatatatgaaagcaGGGGAATAATGCATAgcacttatgttttgtttttgtatcacATGCTTTTACAGCATCAGTGACACATTTTGATCAGGGCTGAGAACATGCAGTGTAGTCAGGCACATGCAGTGCTGTTTCAGATCTTAATTAGGGCAAAGATACTAACTGCATCAGAGCACAAAGGATAGACTTGctaattgttaaaaaatatggaTATTTACACCAAAGAAtttgatgggggggggggttaaatatAGTAAATAGGAGGGGTTtaatcacaaatatatacatttaagttaaaaaaaatatacaatgtttgaaagaaaagattaaactaataatatattaaatcaacCTGTGGAATACACAATTTTGATCTAGTTTTAAAgctttttacattacattcccTTTGTAAAAACGATTATTTCAGAATCACAATATTATCcatatatgtgaaaataatcaatacatttcaatgcgTCTGGTTTTGTGGGATAAACACACTTGTGTTATTTCCACCATTACTCTAAACTACTGAGCCAACTAAGCCTAGCAACCCCAGTTAATGtatcatacattaaaaatgttttccttttatatcTGGAAACTAatcaagattttatttaattctattcagataatgcaacaaaatatattcactttGTGGGTCTCTAACCTTTCCAGTTTTCAACACatcttgaaaaatatttttttcttatatcaaTTAGACTAACTAATGcctcaataaaaataataacaacatattacaa

Function

GO: NA

KEGG:

id description
K13864 SLC7A2, ATRC2; solute carrier family 7 (cationic amino acid transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011422 True 3032 mRNA 0.42 11 23743078 23749052

Neighbor

gene id symbol gene type direction distance location
AMCG00011423 NA coding downstream 1285 23738776 ~ 23741793 (-)
AMCG00011424 NA coding downstream 131567 23610729 ~ 23611511 (-)
AMCG00011421 NA coding downstream 181149 23518801 ~ 23561929 (-)
AMCG00011415 mtnr1al,LOC107664734,LOC105906227,LOC107598318,LOC107741107,LOC103391067 coding downstream 234714 23498826 ~ 23508364 (-)
AMCG00011413 sparc,LOC105030028 coding downstream 381928 23350909 ~ 23361150 (-)
AMCG00011431 tspan17,LOC107680656,LOC107749748,LOC107594893,LOC107653321,LOC106612270 coding upstream 217067 23966119 ~ 23979763 (-)
AMCG00011432 NA coding upstream 245086 23994138 ~ 24000458 (-)
AMCG00011433 NA coding upstream 340220 24089272 ~ 24102925 (-)
AMCG00011436 lrrtm2,LOC107750357 coding upstream 453703 24202755 ~ 24204323 (-)
AMCG00011442 NA coding upstream 1166164 24915216 ~ 24957646 (-)
G106682 NA non-coding downstream 151769 23591101 ~ 23591309 (-)
G106665 NA non-coding downstream 225275 23517378 ~ 23517803 (-)
G106606 NA non-coding downstream 565499 23177228 ~ 23177579 (-)
G106604 NA non-coding downstream 565949 23176857 ~ 23177129 (-)
G106603 NA non-coding downstream 566322 23176480 ~ 23176756 (-)
G106723 NA non-coding upstream 46628 23795680 ~ 23797219 (-)
G106817 NA non-coding upstream 832904 24581956 ~ 24582174 (-)
G106862 NA non-coding upstream 1167112 24916164 ~ 24919197 (-)
G106885 NA non-coding upstream 1237753 24986805 ~ 24991176 (-)
G107035 neurl1b non-coding upstream 2256927 26005979 ~ 26006456 (-)
AMCG00011414 NA other downstream 253436 23393104 ~ 23489642 (-)
AMCG00011409 NA other downstream 682112 23053313 ~ 23060966 (-)
AMCG00011399 NA other downstream 989462 22743430 ~ 22753616 (-)
AMCG00011391 smad5,LOC107664766,LOC107563595,LOC105912044 other downstream 1188941 22542649 ~ 22554137 (-)
AMCG00011356 ndufa2,ndua2,LOC106602938,LOC107661794,LOC107569768 other downstream 3875176 19865614 ~ 19867902 (-)
AMCG00011428 NA other upstream 64805 23813857 ~ 23817543 (-)
AMCG00011427 NA other upstream 80245 23829297 ~ 23835074 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other upstream 1263153 25012205 ~ 25018332 (-)
AMCG00011465 NA other upstream 2268124 26017176 ~ 26019400 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 2757891 26506943 ~ 26516507 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_10106854_10121986 SLC7A2 coding CI01000000 null 10106657 ~ 10123017 (-)