AMCG00011425


Basic Information

Item Value
gene id AMCG00011425
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23760289 ~ 23775508 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011425
aGATTTCCAGTTGAGCTGACTATAACCTTATTGCTCAGACAGCATGGCAGCTAAGGGAAAGGGATCTAAATACAGAGGCACCATTACCGATTTTCCGGATTTTGACGCCCACATTGATGCTGAAGTGCTGTATAAGGCTATGAAAGGAATTGGCAGCGACAAAGAAACTATTATAGATCTAATTACTTCCAGGAGCAATCAACAGAGACAGTCTATCTGTGTAGCCTACAAGTCTCAGTACGGAAAGGACCTTATTGGAGACCTCAAATATGAGCTGACGGGCCATTTTGAACGCTTGATAGTAAGTCTGATGAGGGCTCCTGCGTATCAAGATGCCAAGGAAATCAAAGATGCCGTTGAGGGTTTAGGGACAGATGAGAAGTGTCTAATTGAAATTCTGGCCTCCAGAACCAACAAGCAGATCCATGACTTGGTTAATGCATACAAAGATGcTTATGACAGAGACATTGAAGCGGATATTGTAGGAGACACCTCAGGACATTTCAAGAAAATGCTGATTGTTTTACTTCAGGGGACTCGAGAGGAGGACGATGTGGTTAGCGAGGACCTCGTTGAGCAGGATGCTCAGGACTTGTATGAAGCTGGGGAGGCACAGTGGGGCACTgatgaagccaaattcatcacCATTCTGGGCAACCGGAGTGTCACTCACCTTCAACTGGTGTTTGATGAATACCAGAGGATTGCAGAGAAGGAGATAGAGAGCAGCATTAAAAGTGAGCTGTCTGGTGACTTCCAGAAACTCATGCTGGCCATTGTGGAGTGTATCCAGAGCCGATCGATGTATTTTGCAAAGAGGCTCTACAAATCTATGAAGGGTCTGGGCACAGCTGACAAAACCTTAATCAGAATCATGGTCAACCGCTCTGAAATTGACATGCTTGATATCAGAGAGTGCTTCCGTCTCCGGTATGAGAAATCGCTGTACAACATGATCAAGGATGACACCTCCGGAGAGTATATGAGGACTTTACTAAAGCTGTGTGGAGGCGATGATGATCTAGCTGGCGAGTTCTTCCCTGAAGCAGCACAGATAGCCTACAAGATGTGGGAACTTAGCGCCATGGCCCGCGTCGAGTCAAGAGCGACAATTCACCCTGCTGACAACTTTGACCCCGGCAGTGACGCCGAGGCTCTCCGGAAAGCCATGAAAGGTTTTGGCACCGATGAAGACACCATCATAGACATTATCACGCAGAGGAGCAACTCACAAAGGCAAGAGATTCTGCAGACACTGATCCTTGGCTTGATGATGACTCCAGCAGACTTTGATGCAAAAATGATGAGGAAAGCCATGGAGGGAGCTGGTACAGACGAAAGTGCTTTAATTGAAATCCTAGCTACAAGAAACAACCAAGAGATCCTAGCAATGAATGAAGCTTATAAAAATGCGTATCACAAGAAACTCGAGGATGCCATCAGCTCAGACACTTCAGGGATCTTTTGCAGGGTTCTCATTTCCTTGGTGCAGGGGGCTCGAGACGAGGGGCCTGCCGACATAGAGAAAGCCCAGGAAGATGCCAAAGAACTAGGTGATGCATGCAATGATGATTCTAGCTCCATGGAAACCAAATTTCTGAGTATTCTGTGTACCAGGAGTTACCCCCATCTCCGCAGAGTGTTCCAGGAATTTGTAAAGTGCACAAACAAGGATATTGAGCAAGTCATCAGGAAAGAGATGTCAGGAGATCTTATGCGCACCTTGATTGCTATTGtcCGAAGCATTAAGAACAAGCCTTCCTTCTTTGCTGAGTGTCTTTACAAGGCTATGAAGGGATTAGGCACAGATGACCGGGCCCTCATCCGGCTCTTGGTATCCCGGAGTGAGATCGACCTGTTAAATATCCGCAAGGAGTTCAAGGACCTTCACGACGCCTCCCTCCATGACTTCATCAAGGGCGACACATCAGGAGACTATCGGAAGGGCCTTCTTGCTATTTGTGGAGGGGAGGATTAATTTCCTGAAGTCCAGGACAGTATCCTAACAATGTAGCTCACAATATAGTATTGCACTGTTTACCTTTTACTTTACATTGGAAGTATTAGTAAGAATCACTGACGAGCTGTTTATCAGATCACAGGATTTAACTCACCCTTGTTCTCCACCGTGCTGTTGCCAGTGCTATGCCAAAAATGTACCCACCAGCCTTACACCTAGGACCCAATGCTACTTCTGTATCTTAAAATCTCATTGTACAATGTCAGTGTATGAAAGATTACATGGgggaaaatgtccttttttttgttagttttttttttttacaaatcccTGTTACATTAAAGTGTTGATgtggtaataaaaataaatcaaaacattgatcaAATTAGCTTGGGCTGTTAAAGATctggacattttctttttctggttAGTTCTAGAGTCCAGCAGTGATAATCCTgagttttaaatattcaaataaattgtgACCTTAACATCCC

Function

GO:

id name namespace
GO:0001778 plasma membrane repair biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG:

id description
K17094 ANXA6; annexin A6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011425 True 2457 mRNA 0.45 24 23760289 23775508

Neighbor

gene id symbol gene type direction distance location
AMCG00011420 NA coding upstream 83013 23663024 ~ 23677276 (+)
AMCG00011418 NA coding upstream 102847 23656670 ~ 23657442 (+)
AMCG00011419 NA coding upstream 136989 23622780 ~ 23623300 (+)
AMCG00011416 NA coding upstream 161077 23592543 ~ 23599212 (+)
AMCG00011417 LOC106612256 coding upstream 345147 23403856 ~ 23415142 (+)
AMCG00011426 NA coding downstream 11455 23786963 ~ 23813716 (+)
AMCG00011429 NA coding downstream 134192 23909700 ~ 23938038 (+)
AMCG00011434 ctnna1 coding downstream 373449 24148957 ~ 24174504 (+)
AMCG00011435 ctnna1,LOC107594945,LOC107750356 coding downstream 434482 24209990 ~ 24242241 (+)
AMCG00011437 NA coding downstream 1017864 24793372 ~ 24808824 (+)
G106640 fat2 non-coding upstream 219561 23539365 ~ 23540728 (+)
G106631 NA non-coding upstream 238358 23382282 ~ 23521931 (+)
G106619 NA non-coding upstream 399275 23356734 ~ 23361014 (+)
G106609 NA non-coding upstream 404646 23353628 ~ 23355643 (+)
G106607 NA non-coding upstream 552812 23207246 ~ 23207477 (+)
G106718 NA non-coding downstream 53781 23829289 ~ 23833300 (+)
G106742 NA non-coding downstream 165504 23941012 ~ 23971183 (+)
G106863 NA non-coding downstream 1144343 24919851 ~ 24943678 (+)
G106871 NA non-coding downstream 1163514 24939022 ~ 24940823 (+)
G106874 NA non-coding downstream 1211330 24986838 ~ 24991237 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 7287 23748674 ~ 23753002 (+)
G106618 NA other upstream 403730 23356062 ~ 23356559 (+)
G106613 NA other upstream 418524 23341308 ~ 23341765 (+)
G106242 NA other upstream 3393066 20361208 ~ 20367223 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other upstream 3420964 20296011 ~ 20339325 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other downstream 60311 23835819 ~ 23844911 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 1832478 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 2580659 26356167 ~ 26360775 (+)
G107202 NA other downstream 2994930 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 3042544 26818052 ~ 26842792 (+)

Expression


Co-expression Network