AMCG00011431 (tspan17,LOC107680656,LOC107749748,LOC107594893,LOC107653321,LOC106612270)


Basic Information

Item Value
gene id AMCG00011431
gene name tspan17,LOC107680656,LOC107749748,LOC107594893,LOC107653321,LOC106612270
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 23966119 ~ 23979763 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011431
TTACTTTGCTTTTACACTCCCTGCCTTGTAAGTTGGTAAAGCGTGATAACTTGTCCTCCAGCgctttaatacatttatgagTGGCCTGTTTGGTTGAGttcttctgtctttttctcCTGCAGTTGCTGGGAGCTGCGTTCCTGGGCATTGGACTGTGGGCATGGGCAGAAAAGGGAGTGTTGTCAAATATCTCTTCAATTACAGACCTGGGAGGATTTGACCCAGTGTGGCTATTTATAGTGGTTGGAGGGGTGATGTTCATTCTAGGATTTGCTGGCTGTATCGGCGCTCTTAGAGAAAACACATTCCTCCTCAAATTTtTCTCTGTATTTTTAGGTCTTATTTTCTTCCTGGAGTTAACAGCTGGGATCCTAGCTTTCGTGTTCAAGGACTGGATCAAGGACCAGCTGAACTTCTTCATTAATAACAATGTCAAGGCTTATCGCGATGACATTGACCTTCAAAACCTCATAGATTTTGCCCAAGAATATTGGTCTTGCTGTGGTGCACATGGTCCAAACGACTGGAACCTGAATATTTACTTCAACTGCACTGAGCTGAACCCGAGCCGAGAGCGCTGTGGGGTCCCCTTCTCCTGCTGCCTCAAAGACCCAGCGGAGGATGTACTTAACACACAGTGTGGCTACGATGTGCGGCTTCAAGGAgaTATGGAAcagcagaaatacatttataccaAGGGCTGTGTGGGACAATTTGAAAAGTGGCTCCAAGACAATTTAATAGTTGTAGCTGGCATCTTTGTTGGAATTGCACTACTACAGATCTTCGGAATCTGCCTGGCACAAAACCTGGTGAGCGACATTAAAGCAGTAAAGGCAAACTGGTGACGCCAGGCCCTGAAGACATGACAGTGGCAAGAAACAGTCCAACTCCCGGCCTCCCCTGCCAAGCAGCTGTAAACTGGACTAATGCATGGAGCAGTGTTTGCAGCAGCGTGGGGGGGTTAGGGGTCTTGAAACGTGGATTCCTGTGgattgatctgtttttttttttccccttttgagTGATTTTGCAGAAGATCATAAGTGAGCGATCACAGAGCACACACTCCTGAGAGAAGGTTAAAATATTTACCCTAGAGCACAGGGAGAAAAAATACCAGTTTGGAGACTGccattctttattattattgttataataatgataatgataaaaaaataaaataataagagtaACGACAACAGCGGATCAGATTAATAGTGTCTGCCATTCCAAGCAGAACCTTTTGTTCAGTTTTGAGTTTGCGTTGCTCGCCTCCCCCTCTTTAATTTTTTGGTCTTCACCACTCAAGCCCTTCCATCCTGAATTGATAGGCTGACAGAAATCAGTTAGCTCGGATTTCAGTTTTGATTCTGGCTGCGGGTCCCTATTGAGTTCAATATCCATCGTTTGGTGGACGTAACGTCGGAGGAGTGAGAACGACGGAGGATGCGATCTGTCAACAAACTCTCTGGGGATCTTAGATTCAAACTGACCAGCTGATGGGTTGAAACCTTGTGCGTCGTAAGAGTGGCCGAGTAAATATAAAACCAGTGTTCAGAATCCTATTAACCATTTTAAACCTGGAACCATCTGTTTCTCTTTTATCCTTTTATTATGATAATCTAGTTGTTTTCAAtgctgtctgtttatttttgtatgtttttttaagccaCTAAAAGGAAGGCGTTTATCTGTGTAATACTTAGTACTTCTGGCCTTATAGGCAGGACGTTTAAGTTCATTATTACTAGGCATTAGttagcattattttattttggggaaaTTTCAGAAGCCAACATTTATGTTCTCAACAATATGTATGTTCTATTAACCTTGTCTTAACTTTTTTCCTCACTTTCCTTTTGCTGTTTCTCTAAAATCTGGTAGAAAGACAGAGGAGTAGATTGTGGTGATTGTAATCACTCAACCATGAGTGCGTTGCGGGTATAGTCAATATAATGCACCTTTGGGATGATCACTGCATTCTACTATTACACGGTAGATCTGTTGCTTCACACTTGTCTGTAAAAACAGTTGTGACCAATACTgagatatatttgtaatttgtagaCGAGAGACTTTCTCTCACAGTGTTGAAGCTGTGCCAGTGCCTCCCATTACCTGGAAATGTCAAGGGCTGCAGTTTCCTCGACAGGGACTAAACACCCTGGTGAAACAAGCCAACCCTTTATAGTAATGTTAAGCCCTAGGAAAAGAAAAACGAACATGCTCGAAATTGCTCAGCCATTCTAACTCCAAAAGACAGGGTTGATTGTATTTTGGCAATGGCCActccatctttttcttttcttttttagtacATTCTGCTTGAAAAGAACACTGCTATCCTTTGTTTGTAATGTGTTGAATTGGgcaatgatgttttttttttatttacacgCAAGTACATTCCTGTCAGAAATGACAGTAAAAAGCTTCTATGTACCTGCAGTCTAACATGCTATTTTCTCCTTGTTCTGTTCTTCACCTTCAGCTTACGTGTCTTACTAAGGCATTATATATAATCTAAGTTCAATATCTCAGAAATGAGGTCAGTGGTTCTTTGCCACTGATATGCGAGTGCCAACACTTTGCCTCCTGTAGTGCCAACAAACTGTCTTAAATCACAAGTGGCATCATAACACAGGAAACTAtatagacatttttatttaaagataaatatattgtgGCTTCCAGTGgaagatattatttttttcaaatgccgTCTCTTTAAGATCATTTTCTAAGCCTTTGCATTCCATCCTTTCTGACAGAAGTCACTAACTGCTCCTTCAGTGGTGATATATATTTTGGGGGAAATGGAGAAGACTACATGTTGGCATGTTAATGAGTGCTTGCAATAGTCTGGAGAAATATCATGCATGTTAGAGTCTTAAGTGTAGGGTCTGATGAAAACTCAGCTCAACTGCCTCTCACAGACATGTATGTAGATGTCTGTGTGCAAAATAGTCTACATTCGGTGAATTTCAACACAAAAGCTACAGCACTTCTACCTGTGTGCGAACTGCCTAACGTTCTTTAgtcacatattattattattatatttatcaaactTCCAGACTGTTTAATTTCTACCCATTTTTGCTGACACAGTTGAAACAAGTGCTGGATAGAAATATAGTGCGGCCCAGAATTTAAATgaatagcatttttttaaatatgcaattgtCATGCGTCTTCCCATTCAGACCCATGACATCCTGTCCTTGCATTTCTCTACGACTGAGGAGCTTCCCTGGCAGTTTCTCTGCATCTCCATGTTGAACTTGTACCATTCTTGGTACAGAAATACTGGCCATAATCTGTTTTTctcatagtgtgtgtgtgtgcgatttAGTACAATCTCGCTTTCCTTACATTGTACTCCATTCCTGTCGAATTGTCTCGCACATACAGGTCAGCACCTTGATTATATAAAAGTACCTTAATGCCCTCCGCatcctttacattttattttatttcaaacaagagctatcttttttaatttagattgtgCTTGTTGTTTAGTTGGACTGCCTGGTAAGTGAATTTCGGCTTGGAACAAACTAATAAAGCCCACTGATGGGCCCGATATCTCAAAATAGATTgccataattaattaaattctctACAGATGTCTTTAAGGTAAAAAGGGAAGGTCTCTGGCTTATTGCGGCTGTCTATGAAGAAGCAATAATTGTAAGCAGATGAGTTGGAGCGATTCCCGTCGTTTGAAACCGTTGTTAAAGCATTGTAAGATATCGGCACTTGTTGTTTTGGTCTTGATTCCGGTGTCTTCAGTGTAGTATCACTGAATAAGACACGTTTTGTCTTTTAGactttttgccatttttatttaacttttttaataaagtttctCACGTTTAATTGTACATTGTCTTATTTTAGTACATGTTGCAGGGAGTACTACATCAATGCAAATGTTGTAATTGTAGGTCAACATGTATATGATTTAGCCTTTTGTTCTCCGTGATACTTAAATCCGCATCTGGCAGTGTGTCTTTGGCGATAAATTGGGACCTATTCTAAACTGAGTAATCACAAACAATAgaccaagaaaataaatcattgtgtTCGCAAGCTGTCAAAATGTCTGCACTTGTATGAACCCGTGACTCTAcctcaagacagaaaacaaagtcttaaaaaaaaaaaaaaaaaaaagacaggattTTTATTACCTCCTGTTTCTTTGTGTACCGCAGAACATCAGACTTAccaatttacatttctgtgctgGGTGATGAAGAGAATCTGTTATGACTGCAGAATCCTGTCAGTCTagtgcatattttattttctccaaataTCTGTTATGTTGCAGTCTCTATTCACTTGACTTTGCGCTCTGATTCAGCACAGCACATGGCAACAGCAGAATTATTCCAGTGACTTACAGCCATTAGGTCATGAAGGGAATTCTGATTGTTCAACCACTTGGAAgatattctttaaatatttatatgccAGAGCAGTTATAAAGAATAGAGATGGACCGAAAATATAGCCATCAATGAAGACATTGTTGGCAGCATCTACCTTCAGAATTCTAATTTAGCATTCTTTTATTCGTTTTGATTGTTTGGATTCCATGTTGATCTGATCGATTTCACGTCCCTTTGTAGATCTGTCCTTCTCTTGTCCAGTAACTTGAAGGGGGAGAGGTGGGATATCTAGCTTTTGCAGTTTCCACAAAAAATCAATCCACAGTGGCGTTCCATTATTTCTAATCGCTATCATGATGCTGGCTGGCATATTCCATGCTCCCCAGATTACAATACTAATATCTGGGTCTTTGTATTTGTGTACCATTCGTGAATCGCAACCAACCACATATTTTAGTACTCCAAAATGTAAgagcatatttatatttttaagtaaaggACAGTACATGTTATTTTCTCATAGtatatattcttttttgtttgtttcgtttttgGTGTCCACCCTGTCATTGTTTGTATGTTAGTGTGCTTTCAACCTCACTGAATAGGATTgaactgtttgttttctgtattttcattttattgttttaacctGACAAACAAAAGCTATTGTCTGTGCACAGGCTCAGTACATGTGAAGCTCAGTTATCATTAGGGTATACACTAGTTACTGTATAAAACCATCCTccctttacttttttaaagggGGCAGGGTTCCTATTTTGTTCAAATCATGAGCTGCATGAGGCCCCAGTGAAATTACCGCAGTTGGGCTCCTATGTTTTGTGATGTAATATTACTAATCCAGtacaattaaacataatacacTGTTACACTTCAGtcttacatttgtgtttttaaacctgGTCTCTTGAGGGTGCTGAGGTTACTGCTCCCCCACTCACTACTTTGAATGATCTGTGATGCAGTATTACAAGGTCCTTATCCATTAGTCATTCAAGGAGAAACGAacgtgaaagaaaaaaaaaaaatcactgtcatttttattttccaagtaGTAAACGTTAACAATGTTGAATTGTTTACAAGTTTGATTCCTAAAACAATTTGTTAGAACTACTAgttttgatgaaaataaataaaaagacattgatTGTTGGACATGGTCTGTTACACTGTATATTGTCTTATAAATATGCTTCTTTTTCATATTGAATAAAATGATTTATGACACA

Function

symbol description
tspan17 Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN17 (tetraspanin 17).

NR:

description
PREDICTED: tetraspanin-17

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17345 TSPAN5; tetraspanin-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011431 True 5665 mRNA 0.39 7 23966119 23979763

Neighbor

gene id symbol gene type direction distance location
AMCG00011422 NA coding downstream 217067 23743078 ~ 23749052 (-)
AMCG00011423 NA coding downstream 224326 23738776 ~ 23741793 (-)
AMCG00011424 NA coding downstream 354608 23610729 ~ 23611511 (-)
AMCG00011421 NA coding downstream 404190 23518801 ~ 23561929 (-)
AMCG00011415 mtnr1al,LOC107664734,LOC105906227,LOC107598318,LOC107741107,LOC103391067 coding downstream 457755 23498826 ~ 23508364 (-)
AMCG00011432 NA coding upstream 14375 23994138 ~ 24000458 (-)
AMCG00011433 NA coding upstream 109509 24089272 ~ 24102925 (-)
AMCG00011436 lrrtm2,LOC107750357 coding upstream 222992 24202755 ~ 24204323 (-)
AMCG00011442 NA coding upstream 935453 24915216 ~ 24957646 (-)
AMCG00011446 faf2,LOC102776530 coding upstream 1012585 24992348 ~ 25003276 (-)
G106723 NA non-coding downstream 168900 23795680 ~ 23797219 (-)
G106682 NA non-coding downstream 374810 23591101 ~ 23591309 (-)
G106665 NA non-coding downstream 448316 23517378 ~ 23517803 (-)
G106606 NA non-coding downstream 788540 23177228 ~ 23177579 (-)
G106604 NA non-coding downstream 788990 23176857 ~ 23177129 (-)
G106817 NA non-coding upstream 602193 24581956 ~ 24582174 (-)
G106862 NA non-coding upstream 936401 24916164 ~ 24919197 (-)
G106885 NA non-coding upstream 1007042 24986805 ~ 24991176 (-)
G107035 neurl1b non-coding upstream 2026216 26005979 ~ 26006456 (-)
G107037 NA non-coding upstream 2029757 26009520 ~ 26012447 (-)
AMCG00011427 NA other downstream 131045 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 148576 23813857 ~ 23817543 (-)
AMCG00011414 NA other downstream 476477 23393104 ~ 23489642 (-)
AMCG00011409 NA other downstream 905153 23053313 ~ 23060966 (-)
AMCG00011399 NA other downstream 1212503 22743430 ~ 22753616 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other upstream 1032442 25012205 ~ 25018332 (-)
AMCG00011465 NA other upstream 2037413 26017176 ~ 26019400 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 2527180 26506943 ~ 26516507 (-)
G107713 NA other upstream 5645321 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 5906453 29886216 ~ 29920020 (-)

Expression


Co-expression Network