AMCG00011436 (lrrtm2,LOC107750357)


Basic Information

Item Value
gene id AMCG00011436
gene name lrrtm2,LOC107750357
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 24202755 ~ 24204323 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011436
ATGCTGCTCCGCCTGTTGCCCACGTCAGGCACGGCCTGCCCTCAGAAGTGCCGATGTGAGGACCTGCTGTTTTACTGCGACTCGCAGGGCTTTACGGCCCCCCCAGATGGTGTGGACAAGGGTGCCCTGGGCCTCTCATTGCGGCACAACAGCATCACTGAGCTGAGCCCAGACCAGTTCTACGGATTCAGCCAGCTCACTTGGCTCCACCTGGACCACAACCAAATAACGACTGTGCGGGAGGATGCCTTTCAGGGGCTCTACAAGTTGAAGGAGCTTGTTCTGAGCTCCAACAGCATTTCCAAGCTGCCCAACACCACCTTCATCCACCTCATCAACCTCCAGAACTTGGACCTCTCTTTCAACCAGATGACATCTCTCGAAGCAGAGCTGTTCCACGGGCTGCGCAAGCTCCACACCCTCCACCTGCGCTCCAACTCTCTGCGCACAACCCCTGTCCGCGTTTTCTGGGACTGCCGGAGTCTGGAGTTCCTGGACCTGAGTAACAATCGCTTGAGGAGTCTGGCCAGGAATGGCTTTGCAGGCTTGATCAAATTAAGAGAGCTCCACTTAGAGCATAATCAATTGACCAGGATCAATTTGGCTCACTTCCCCAGGCTAATATCCCTTCAAACGCTCTTTCTACAGTGGAACAAAATCAACAATTTAACATGTGGGATGGAGTGGACTTGGACAACTTTGGAGAAGCTGGATCTCACCGGGAATGAGATCCGAGTACTGACCCCAGATGTGTTTGAGACTTTGCCCAATCTCAAGGTTCTGCTACTGGATAACAACAAGCTCTCTAGCCTCGAATCCAAAATCTTGGATATGTGGAAATCATTGAGCACTGTGGGGCTTTCAAGCAACCTTTGGGAATGTACCAAAAGGATCTGCTCTATTGCTACTTGGCTAAGTACCTTCAAGGGCAGGTGGGAACACTCGATTTTGTGCCACAGCCCCGAGTACGCACAGGGAGAGGAAATACTGGATGCGGTTTATGGGTTCCAGCTTTGTCAGAATTTTTCCTTAGTGGTGGCTCCAACTCCTGCTTCTCCAGAGGCCGCTTCACCTATGGATGCCACAAGCTCTTCTTTTGGAATTATGCTAACCCCCACACAGGACTTCTATGCAGAGGATATCGGGAGCTTTACTACGATAACCACAACCACCACCCTTCCCCCAACCACCAGCCCCTCAACTACAACCACCACCTTGACAGGGGAGGCCATCACAGAGGAGGACTTTTCAGAGATGGACAACACTCTTCTCACCCAGCGGGTTATCATAGGAACCATGgcccttttgttttccttctttctcaTCATCTTTGTGGTCTACATCTCTCGGAAGTGCTGTCCACCCACTCTGAGGCGTATCAGGCACTGCTCAGCCATTCAGAACCGCCGGCAGATGAGGACCCAGGCCAGGCAACCTATGGCAGACCTCGCCACCCAGGTCCCATACAATGAGTATGAACCAAGTCACGAGGAAGGGGCCCTTGTCATTATCAACGGGTATGGGCAGTGCAAGTGTCAGCAGCTGCCTTACAAAGAGTGTGAAGTAtga

Function

symbol description
lrrtm2 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human LRRTM2 (leucine rich repeat transmembrane neuronal 2).

NR:

description
PREDICTED: leucine-rich repeat transmembrane neuronal protein 2

GO: NA

KEGG:

id description
K16665 LRRTM1_2; leucine-rich repeat transmembrane neuronal protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011436 True 1569 mRNA 0.52 1 24202755 24204323
Loading

Neighbor

gene id symbol gene type direction distance location
AMCG00011433 NA coding downstream 99830 24089272 ~ 24102925 (-)
AMCG00011432 NA coding downstream 202297 23994138 ~ 24000458 (-)
AMCG00011431 tspan17,LOC107680656,LOC107749748,LOC107594893,LOC107653321,LOC106612270 coding downstream 222992 23966119 ~ 23979763 (-)
AMCG00011422 NA coding downstream 453703 23743078 ~ 23749052 (-)
AMCG00011423 NA coding downstream 460962 23738776 ~ 23741793 (-)
AMCG00011442 NA coding upstream 710893 24915216 ~ 24957646 (-)
AMCG00011446 faf2,LOC102776530 coding upstream 788025 24992348 ~ 25003276 (-)
AMCG00011448 LOC107667449 coding upstream 844852 25049175 ~ 25054840 (-)
AMCG00011447 NA coding upstream 851072 25055395 ~ 25071697 (-)
AMCG00011454 LOC103356984,LOC101466388,LOC100710497,LOC102193786,LOC102784017 coding upstream 911234 25115557 ~ 25116417 (-)
G106723 NA non-coding downstream 405536 23795680 ~ 23797219 (-)
G106682 NA non-coding downstream 611446 23591101 ~ 23591309 (-)
G106665 NA non-coding downstream 684952 23517378 ~ 23517803 (-)
G106606 NA non-coding downstream 1025176 23177228 ~ 23177579 (-)
G106604 NA non-coding downstream 1025626 23176857 ~ 23177129 (-)
G106817 NA non-coding upstream 377633 24581956 ~ 24582174 (-)
G106862 NA non-coding upstream 711841 24916164 ~ 24919197 (-)
G106885 NA non-coding upstream 782482 24986805 ~ 24991176 (-)
G107035 neurl1b non-coding upstream 1801656 26005979 ~ 26006456 (-)
G107037 NA non-coding upstream 1805197 26009520 ~ 26012447 (-)
AMCG00011427 NA other downstream 367681 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 385212 23813857 ~ 23817543 (-)
AMCG00011414 NA other downstream 713113 23393104 ~ 23489642 (-)
AMCG00011409 NA other downstream 1141789 23053313 ~ 23060966 (-)
AMCG00011399 NA other downstream 1449139 22743430 ~ 22753616 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other upstream 807882 25012205 ~ 25018332 (-)
AMCG00011465 NA other upstream 1812853 26017176 ~ 26019400 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 2302620 26506943 ~ 26516507 (-)
G107713 NA other upstream 5420761 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 5681893 29886216 ~ 29920020 (-)

Expression

AMCG00011436(lrrtm2,LOC107750357) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
End of interactive chart.

AMCG00011436(lrrtm2,LOC107750357) Expression in each Bioproject

Bar chart with 5 bars.
AMCG00011436(lrrtm2,LOC107750357) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1244755 LOC106604128 misc NC_048578.1 CM023232.3 38824503 ~ 38852543 (-)