AMCG00011437


Basic Information

Item Value
gene id AMCG00011437
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 24793372 ~ 24808824 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011437
CGTAACCGGATAGTAAATTGGTACAGTGGACTGTTGCAGTATGATCAGCTGAGTGCCTTTGTCTCGCTTGTGTAGTTGTAGTACAGctgtttcgttttgtttttgttttctagtcggttgttgtgtttgtgtttgatttgcACAGCCTCGCATTATCCCACGACACTAACTCGCACACAGGTTGTGTGAGACGCATCTTGTTGCGCTGCTTCAGGGGTTACGTTCACTGTATTTGCGGAACAGGTTTTTCGGCGCAGAAAAGGATCACGGTCGATTGATAGGTGTGTAAGCGCTGTATTCACTGTattcaaagcatttttcatTCACCAGAACACATTTTAAGCGAGGCACCCGTATacgaaatatatatttttattattttttgtattattttgacgCATACAGTGTAGCTGACACGATAAGCTAATCGTCCACCATCAGCAACTGTGACACAAGCCGGGAGGTTCCGCCTACTCgcacagaaatgaaaatcaagGATGCTAAAAAGCCGTCTTTTCCATGGTTCGGCATGGACATCGGGGGGACGCTGGTGAAGCTGGTTTATTTCGAGCCAATCGACATCACTgcagaggaggagcaggaggaagtGGAAAGCCTGAAGAGCATCCGCAAGTACCTGACCTCCAACGTGGCCTATGGCTCCACAGGCATCCGCGACATCCACCTGGAGATCAAGGACCTCACGCTGCTGGGCCGTCGCGGCAACCTGCACTTCATCCGCTTCCCCACCCACGACATGGCCACCTTCATCCAGATGGGCCACGACAAGAACTTCTCTACCCTGCACACGGTGCTCTGCGCCACCGGGGGCGGCGCCTACAAGTTTGAGGAGGAGTTCCGCACGATTGGAAACCTTCAGCTTCATAAACTGGATGAGCTGGACTGTCTGGTGAAGGGGCTGCTGTATATCGACTCCCCGAGTTTCAACGGCCAGGCCGAGTGCTATTATTTTGAGAATGCCTTGGATCCTGAATGCTGCCAGAAGATGCCTTATAACCTGGAAGACCCGTACCCCATGCTGGTGGTTAATATTGGTTCAGGGGTCAGCATCCTGGCCGTGTACTCGAAAGACAACTACAAACGAGTTTCCGGGACCAGTCTAGGAGGCGGCACGTTCTTGGGTTTGTGCAGCTTGTTAACTGGCTGTGACAGCTTCGACGAGGCCCTGGAGCTGGCCTCCAAAGGGGACAGCACAAATGCGGACAAGCTGGTCCGGGACATCTACGGTGGGGACTATGAACGCTTCGACTTACCAGGGTGGGCTGTGGCTTCCAGCTTCGGGAACATGATCCACAAAGAGAAACGAGAGTCTGTCAGCAAAGAGGACTTGGCAAGAGCTACCCTGGTTACCATTACCAACAACATCGGCTGGATCGCAAAGATGTGTGCTGTGAACGAGaaaataaaccGAGTAGTGTTTGTGGGGAACTTCCTCCGTGTGAACACTCTGTCCATGAAGCTCCTGGCCTACGCTCTGGATTACTGGGCTACTTCGGAGCAGTGGGTGCCCTCCTTGGTCTAATGAATTTTACTTAAGGTCTGCTTTCAACCTGGTTGCCGATGTCCTGCGCTGACAATGATTCTGCTCATGGTCAGGTCTGTCTGACAAACAACCAAAGGACTGCAAAATGAAGCTTTCATCTGTAACAGGTGAAGGGTCCTAGAGAACACCCATTCtctataatatattgaaaattgTACTCactggagagaaggagagagggaaataGAAGTGAGAgggattttagtttttgtaaagaaagaaaaaagatttttgtatttgggGTCCAACTCGGAGTAGCATTTATTGTTGTGATTACTTGTCACTACGCAACCTCTGACTCATTTCATGCAAAAGCCTGTTCTGTTTGGTCACTCTCGGCACACAAAGGCCCATCCTTATCTTCTATATTTTGTGAGATTCCACCCTAGGTTTTGAgacattcatgtatttattgtttactgTTGATGGCATTAACTGTGTGAATTCTGCAGGTTTAGACACCCATTTTAAAGGCATTTATCTGTATCATTAAATTGCTATTTAGAAGTTTTGTATTGTAGGTGAACATTCTGGGcccatggagagagagagagtacttTTCAATTGAAGAGAAAGATAATGACCATGCCTGTGTCATATATGGCTAAATTATTAGCATCTAATATTCAGCTAATGTTCCCGATCTCACCCTCAGTGCCTCAGTTTTCCATCACAAAGTGAATTATTTTCTGCAGTAGAAAACACATCGTACCCCCTTTCGTTTCAAGTGCAGACAATCTACTCCACTGTAAGTTCAAGCCAATACCATTTAAGTGTACAAAATTGCATTCTTCTAGATTCAGAGACACAAACTATGTGTGCAATGAATGCAAATTTGCTAAAACCCACTAAATGTGTTTCCATAGTTTAGTCTGTTTAAAAGGATCAAACTCAGATTCCTGGAACTGAGTGTCATATTAGAGTGACTTGGCTTCAGTGAAAGGAAGATTTTCAGGGGCAAAACTGAGCATTGTTGGCTGTTATGTGTGTTATGCCATGCCTTCGCATCAGAGTTGTAGTACATAACATTTGACACTACTTAAAAACAtggcatttcaatattttattattaaattattaatctgGGAAATGGAATAGACActttttcttataaatatatatttatatattttaatgcccTCAAAACTGGCCAAATACCTGAGCAAAATTCAACTACGAAGTTTTTTATGTGAATGGGAGAATCCAAGAAGAGGTATctgcttttcaattaaaatataggtGATCTGtatagtgtttattattatgcaaaGCATTtccataaatgtaaaataacctCAAATATCTTATGTACGTAAGCCTTGTATAAAGAACATCTTTTAATCCGTTTTTATGTGAGGTTCCTCTACACTGCACCTTATTCTAGTATTTTGGCATCACATTCGCTTTTCTACTGTGATTTCtccagtacattttaaaaagacagtgGTGGTGCAAAACCCATAAACAATGCACTTGCACGTTAGCTAGCATAGTTAGTTTATAACATATCAATACTGTGAAAGAACTGAAAAGCACTACGATTCCTGATGGGTTGTGCCATGTGTGGTTTCATTTACTTGGGAGTCAAGTCGAATTAGAAGtcgttatttttatttcccattaCCAGAACCTCGAAATGGGAATGGAAAGTAGAAACCGTGTTGATGAGACTTGATCTCGATCTTAAATATTGGCAGCTTTAGTTATCTGAAATTGTCATCTCCATCTTCTCAGACTATTTCAGTCTTTCACATCTACCTCATAGTAACCTCATCCGAGCCTAACTTCAGTATTTCACAAGGGGACCTACACGTGAGTTAGTATTTCAGATTGTGGGTTGCAACCTGCAGTTGCAGTGCGTGTGACTAGAGGGCAGGcttttgcatgtttatttggCAGCTCACTTCCCCTCTTCTCTGATATGTCCCTAGAGGAGGCCAGCCCCGGAGAGCCGCAGTGTTTCCAGGTTGTCATTTCACTCTGCTCTGTTAACGACCCAATTCAACTTGAGCATTGGCTTCACAGGCCCAATTTAGAGTCAAGCCCCCAATTCCTAAGGTTCTGGTATTAGACCAAGAAAATCTGCTGGACTGTGGATCTTCAAGACCAGGGCTAGGACTTCACCTTTCCCTGCTTACTATAACTgttcatttaaattcatataaaGTTATATAGAAAGATACTAGAGGCCAGATTAAGACAAAACCATGACCCACCTcctataaaaattgaaaataagtcCCACACTGGATTCTTATTTCTCCTGCTCGTAGATATAACCCCTCTCACTTACATGTTTGTAGTTTTGCTGTGGTTggtgggtcaaggttttgattgaatccagccctgtgtctgtgcattgCATTGGGGAGAACCGTGTCAGAGGTTGTGTGGACGGGATCTGTATGGCCAGTAAACAGTAATACTGTACACAACCTATTCCATTCGCCGGTTGCCATGGCAAGCCATTGCCTTTCTTTGTCATTGTTGgcaatactgtatataacatttaaatcatgttGTAGTCTGGACCATCCTGATTTGCTGTAAAGTCTataaacactgtattttaattgtcgttttgttttttacatcaattatttaaaatctactTAGACATCtctacaacaacaataaaatgttttctgaaaaatctactagtaatatatattttaagaagcaGTAGTGTTAACTTTGATTAATGTTTAccataacttttatttttattaaacttgaAAATGCTGTTGCCTTCTtgataataacattaaaaaagggtTGCTTCTCCTTCGTCTCCACCGAGGTAAGTCTTGTCGCATTCAAGGTACTGTGAAAAGGTTGCTTTGTTCTGTTGGCTTTCCTCTTTGGTCCTGTGATTTGAGGGGAAGCCTAATCTGGGGAATGGGTTTTGAGTGCTATTGTGTCATCATGTAGACTGCTGTTTAGAAATGAAATACCAGAacaatatatattcagttttaataacacTAGAAACAATTGtgaatagaaagtgtttttattttattttatcataatacattttttatatattggcTCTCCTTGCATAAGCGtgttctgcatttttattatttttaagggaAACTCAAAATGTGTTCTGGCACAATGTGTCCAGCAGGTGGGGATAAGTTCCTCctgaaggaaataaataacaactatGTAAACTTGAAAggtttatttaaagatttaaaagactGTATGCACCTTGACCTGAAATGGTCATAGTTAATACCTCCCATAACAATTGCTTTGAATTAACCTTGCGTTAAGTGCTATGCATGCTAGagctgtgttttgtatgtgtggtGAACTAGATTATTGAAGTCAATCTCTAAGCTAAACTCATATACACTACTTCTCCAGGACGTGCCTGTGGCATCATAGTTTTCACAAGTGTAAATGTGACCAAAATGGAAATCGGTTTACTGATGACATCTACAGTATTggttaaatgaatacatcagtTCAGAAAAGTATTAGAAGCATTCAGGCAATAACGGGtgactggatttgttttttcctgagtaaactattttgaaattcatttttttttatttaattgtattaaattcatGTTACTTAGCCTTTGAAAGTTaaattcctttcttttttctgaagtATGTGCCGACCTTAGAGTTAACCAATTACCCACTGTGAATTAAcgtgcattttacattttcaggttCAGTGTTTCATTCTACTTgaacatttgtaatatttgttttgttttctgaaaaagcaTAATCATATGGATGTCGATTATTTTGGATTACTAACATGATAACATGAAACTGGCACAATGGTACAGCACACTCTGCTACAGATCATGTCAAttgtacaaaatgaaaacaaattattcacATCCAATtgacatgtatttctttttgcattttgtttcactgaCTCATTTTATGCCTTTGCCTAAGTTGAATGTTACTGGAGGGATCTCTTTGGGCGATCCATTTTCAGATCTTAACAGTGACTCGATCTGATCCTACTGCTTTAATCATTCTGCAATAAaaccttctttaaaaaaa

Function

GO:

id name namespace
GO:0015937 coenzyme A biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004594 pantothenate kinase activity molecular_function

KEGG:

id description
K09680 PANK1_2_3, CAB1, coaW; type II pantothenate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011437 True 5616 mRNA 0.40 7 24793372 24808824

Neighbor

gene id symbol gene type direction distance location
AMCG00011435 ctnna1,LOC107594945,LOC107750356 coding upstream 551131 24209990 ~ 24242241 (+)
AMCG00011434 ctnna1 coding upstream 618868 24148957 ~ 24174504 (+)
AMCG00011429 NA coding upstream 855334 23909700 ~ 23938038 (+)
AMCG00011426 NA coding upstream 979656 23786963 ~ 23813716 (+)
AMCG00011425 NA coding upstream 1017864 23760289 ~ 23775508 (+)
AMCG00011439 NA coding downstream 8755 24817579 ~ 24824029 (+)
AMCG00011438 NA coding downstream 72532 24881356 ~ 24886761 (+)
AMCG00011441 NA coding downstream 106251 24915075 ~ 24916940 (+)
AMCG00011440 rnf44 coding downstream 162723 24971547 ~ 24986723 (+)
AMCG00011443 cltb coding downstream 194840 25003664 ~ 25014869 (+)
G106742 NA non-coding upstream 822189 23941012 ~ 23971183 (+)
G106718 NA non-coding upstream 960072 23829289 ~ 23833300 (+)
G106640 fat2 non-coding upstream 1252644 23539365 ~ 23540728 (+)
G106631 NA non-coding upstream 1271441 23382282 ~ 23521931 (+)
G106619 NA non-coding upstream 1432358 23356734 ~ 23361014 (+)
G106863 NA non-coding downstream 111027 24919851 ~ 24943678 (+)
G106871 NA non-coding downstream 130198 24939022 ~ 24940823 (+)
G106874 NA non-coding downstream 178014 24986838 ~ 24991237 (+)
G106906 NA non-coding downstream 238700 25047524 ~ 25049147 (+)
G106946 NA non-coding downstream 528728 25337552 ~ 25337767 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 948461 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 1040370 23748674 ~ 23753002 (+)
G106618 NA other upstream 1436813 23356062 ~ 23356559 (+)
G106613 NA other upstream 1451607 23341308 ~ 23341765 (+)
G106242 NA other upstream 4426149 20361208 ~ 20367223 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 799162 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 1547343 26356167 ~ 26360775 (+)
G107202 NA other downstream 1961614 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 2009228 26818052 ~ 26842792 (+)
G107394 NA other downstream 2903382 27712206 ~ 27727867 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location