AMCG00011445 (higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757)


Basic Information

Item Value
gene id AMCG00011445
gene name higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25012205 ~ 25018332 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011445
ATGGCGGCGGCAACAACTCCTGTAGGGCATCAGGCGTCCAAAACCTCTCCTCCCGGAGCAGCCTTTGACCTGTCCCAGCCTCCCGTCATTGAAGGGTTCACCCCTCTGCCGAGGCCCAGGGAGGAAGGATTCAAGGATAAGTTGCCTGGGGACAGCAGGAGCCCTCACTTACGGACTCATTGCCTTCAAGCACGGCAAGACTCGCCAGTCTCAGCTGTCCATGAGGGCGCGTATCTTTGCCCAGGGCTTCACTGTAGTGGCTATCCTGGTGGGTGTGGCGGCGACAGCCCTGAAGCCCAGATACTGAACAGATGTGCCAGATGGGAAAGAGTGATCGTGGATGACTTGGGGACATGCCTGGCCATGGTGGTTGCTGTCTCCTGCCCTGATTCTTCTTTTAGGAAATAGTAATGATGGGGAACAAAGATACAGATCCTTCAATCTGTGTGGCTTAGAtcgatttatttttaaggaattaTAGGcacatctatttttttcttttcttttggtaaagcatttttgttttggataCAGAATGCCTTAAAATAAGTTGGTTTCCAACATCATGACTTCCCTTAATACAGAAGCCTCAGACTTTGCGGTGCACTTGTAGCTGTTCACATAAcggatttatttattctggtgAAATATGGTAAAATATGTTGTATGTTGTGCAACTGTTAAAGTTCTATAAATATACCTGTCTTGAGAATTACAGTCAATGGTGTACCTTGCATCCATACATGTTACATGTTACAACATTGAAGCTGATGGGTATGATTTGTATATGTAAGCCATTTTAGGCTATATTTAAGCTTATTGTTGAGGTAAGAGAAGAGTAATTTCAGACACAGTGTTGTAGATAATTATAAGCAGTTGCAACAGCACATAGACGGAAACATTTAAGCTTTCAAATACCAGTAGTACCAAAGGGAAAACttgattgaaatgtttaatttatatataatcttgTGCCTGCAACTTAGGTTTTCCTGTAACCTaaactttcaaatgatgtgttcTGAGAAAATGTTTCAGATTGTACCACTGCTGAAAGCTGGCATCGCTGGATTCCTCCATGTTTCCATTGCCCCTTATAAAtgactgtaaatgtaatattaataaaatgtatccatGCCAAAACGTTATTTTGAAATATGGGTTGTACCTTCAGtaaaattcaaaattacaattttaattgcgAGGGAAGTATCTACTGATCTTTGAGACCATAGCGTACAAATCATGAACTGCTTTTAATCACATAATGTACCTTCAAATAAAAGACGTGTCTATccttcaaattaatttccagCCAGGACTGTATTCCCAACACATAGGCAATATTactgcaaataataaatacagctgtTGAATAGTCTGAATAAACTAATTGTACTGCTGTATGCTAAGATTTTCTACACTGTTAATACAATCTCAGTAATACAGAAGCACTTTTGTACATTGATTGGTTCCTTGGTTAATCACGGTCTTGTTACAGTATTCGTATGCCACCACATTCAAGCAGATAgtgatacaaatacattttccatttcaacaaGACCTTGATTGTTAATTTATCTTAAGAGGGGTGGGGAATTCTAGCAGTTAATTTAAACTGTTCCTGCTCTTGTAAAATTGTGAGTTAATAAACATTCAGGTAAATTATCTTATTACaactttgttgtttatttaacacTAAGCTTTCAAAATATATCCTGTGACAATCAATACACTTTTCTTCTATATGGAGCTCATACAGATGGCAAATGAAACGCAAAACAAAGATGTTAATATATAATTCAGCTTTAATTTCTTTTTGTAAGAGgtaacagttttctttttctaaaaccGATGCATTTCAAACTACGCCATATATACTCAtgcacaaatatacatgtatgcaaCAGAAGCGTACGAGACAGTAACATGAAGAGAATCCAATGTGAATTCCAGAGATGAGTTCTCTTGCGGAGAGTTCTTCCTCGTTAATATTCAGaagactgaaactgaaagtgcAAATGAAACCGTGGTAACTGAATTGTGTCATGGGGGGNNNNNNNNNNTctgatacaaaatacaaaatcaatgtaaaCAATAA
>TU133710
GTCTTCCTGTTTGCAAACATGGCGGCGGCAACAACTCCTGTAGGGCATCAGGCGTCCAAAACCTCTCCTCCCGGAGCAGCCTTTGACCTGTCCCAGCCTCCCGTCATTGAAGGGTTCACCCCTCTGCCGAGGCCCAGGGAGGAAGGATTCAAGGATAAGTTCATCAGAAAGACGAAGGAAAACCCGTTTGTGCCGATAGGTTGCCTGGGGACAGCAGGAGCCCTCACTTACGGACTCATTGCCTTCAAGCACGGCAAGACTCGCCAGTCTCAGCTGTCCATGAGGGCGCGTATCTTTGCCCAGGGCTTCACTGTAGTGGCTATCCTGGTGGGTGTGGCGGCGACAGCCCTGAAGCCCAGATACTGAACAGATGTGCCAGATGGGAAAGAGTGATCGTGGATGACTTGGGGACATGCCTGGCCATGGTGGTTGCTGTCTCCTGCCCTGATTCTTCTTTTAGGAAATAGTAATGATGGGGAACAAAGATACAGATCCTTCAATCTGTGTGGCTTAGAtcgatttatttttaaggaattaTAGGcacatctatttttttcttttcttttggtaaagcatttttgttttggataCAGAATGCCTTAAAATAAGTTGGTTTCCAACATCATGACTTCCCTTAATACAGAAGCCTCAGACTTTGCGGTGCACTTGTAGCTGTTCACATAAcggatttatttattctggtgAAATATGGTAAAATATGTTGTATGTTGTGCAACTGTTAAAGTTCTATAAATATACCTGTCTTGAGAATTACAGTCAATGGTGTACCTTGCATCCATACATGTTACATGTTACAACATTGAAGCTGATGGGTATGATTTGTATATGTAAGCCATTTTAGGCTATATTTAAGCTTATTGTTGAGGTAAGAGAAGAGTAATTTCAGACACAGTGTTGTAGATAATTATAAGCAGTTGCAACAGCACATAGACGGAAACATTTAAGCTTTCAAATACCAGTAGTACCAAAGGGAAAACttgattgaaatgtttaatttatatataatcttgTGCCTGCAACTTAGGTTTTCCTGTAACCTaaactttcaaatgatgtgttcTGAGAAAATGTTTCAGATTGTACCACTGCTGAAAGCTGGCATCGCTGGATTCCTCCATGTTTCCATTGCCCCTTATAAAtgactgtaaatgtaatattaataaaatgtatccatGCCAAAACGTTATTTTGAAATATGGGTTGTACCTTCAGtaaaattcaaaattacaattttaattgcgAGGGAAGTATCTACTGATCTTTGAGACCATAGCGTACAAATCATGAACTGCTTTTAATCACATAATGTACCTTCAAATAAAAGACGTGTCTATccttcaaattaatttccagCCAGGACTGTATTCCCAACACATAGGCAATATTactgcaaataataaatacagctgtTGAATAGTCTGAATAAACTAATTGTACTGCTGTATGCTAAGATTTTCTACACTGTTAATACAATCTCAGTAATACAGAAGCACTTTTGTACATTGATTGGTTCCTTGGTTAATCACGGTCTTGTTACAGTATTCGTATGCCACCACATTCAAGCAGATAgtgatacaaatacattttccatttcaacaaGACCTTGATTGTTAATTTATCTTAAGAGGGGTGGGGAATTCTAGCAGTTAATTTAAACTGTTCCTGCTCTTGTAAAATTGTGAGTTAATAAACATTCAGGTAAATTATCTTATTACaactttgttgtttatttaacacTAAGCTTTCAAAATATATCCTGTGACAATCAATACACTTTTCTTCTATATGGAGCTCATACAGATGGCAAATGAAACGCAAAACAAAGATGTTAATATATAATTCAGCTTTAATTTCTTTTTGTAAGAGgtaacagttttctttttctaaaaccGATGCATTTCAAACTACGCCATATATACTCAtgcacaaatatacatgtatgcaaCAGAAGCGTACGAGACAGTAACATGAAGAGAATCCAATGTGAATTCCAGAGATGAGTTCTCTTGCGGAGAGTTCTTCCTCGTTAATATTCAGaagactgaaactgaaagtgcAAATGAAACCGTGGTAACTGAATTGTGTCATGGGGGGNNNNNNNNNNTctgatacaaaatacaaaatcaatgtaaaCAATAAACATCCCACTTGCAGTTTAGTTTCATGGAGTGTCTGAACCAATTTTGTTCTTCCACATTATAGGGAAGTTCCCCCTCATTAAGTATATGTGGTCGGAAATCTTGTCGATGGATACTGAACACTCTTAGCATTGCTTTTGATTTCACATTTTTTCGACTGTGAGGATGagtacaaaatatgtaaacCAGAACTTGGGGGGATGAAGGCTGAGAGAGCATGCGCTTGTGTCTTCCTgctttggaaatacattttcagtaggAAGATTCCCTGGTGATGTTTGTGATGCACTGCGAAGCTGTAGTCATTTGATGGGAATTATAACACAAAAGcaagaagagaaggaaaacaaaattgtccgaaaaagaaaagcaggtcTTGGGGTTGAAGAGGCACTCATTTTCTGGCAGTAGAGGAGCAAGGTTCTTGGAAAGGCCACAAAATACGACAtatgggaacattaaaaaaacacttgacaATGTCTGGTGATTCTAGGTGTAATCTTACTATCCTATAGTAATAGCAAACAGACCTGTTCAATAACAGCATTGTGTTTTCTACAACATTACACTGGTGTAGTATATATTCTCCCTGTAGGGAATACCATATCTCGACTAGAAGCATCACAATACTACAAAGATGACCACAACTCGGCACACTGGTCAGCTAGACCTATGACAGAAACGCTTATTTATGTCATACTCTTAAGTCAAAAGGTTTTCctgtaagaaaatgaaaatgcttcaCAACTTACTGATAATATGCATGTAAAAGCCCTTTAAAGGTCACTCAAAGTGGTTTACAAGTAATTGGTGAATCGGCTTTCAAAACTAGGTCAAAGTAAAGTGTGAgacagtggtgtgtgtgtttgtgtggagtGGTGGGGGGTTGGTTAAAGACCAAGTTTGTCTACCATACTTTGGCAAATACAACAAGGCATTACATGCAGTGCGGACGGAGGGACTAGCAGCAGACccgtgtttttcaagcacacaGACCCTGATCAGTGGACGGTGCCATTTCAAAGGAGATAAAGTAGACCTTGGCAAGAGGCCGATGGTTTTATTTTGCGCTACCCACAGTCTCCATGATCAAAGCCAGTCTCATGATGTCCGAGAACAATTTCCATTTTGAGAAGgacatcaatttttattttcttcatcgaatttgttttaaaaaatcgCTTTCTGTGGTGTGACAGACAACGCACAACATCTACGCATGCAGCTCTTCCGCCAACCGTGAGATTTTCCTCACTAAAAAGCAATATTGACAAGCAGTGTTGTTGTATTTCAAATCTAAGAAACTTGGTATCAAAGAACAAGCCACCGTGAAATTATGAGAAAGGGACATTTTTTTGGGACCTCTtgagaaattgtgttttttaaatccattagaCTGTTGAAAACCCAGgatttgtaacattttgtttgcagaGTTGAGGTATATCTTCAAAATTCAATGATGTAAAGAACATTATCACCTGGAAAATAAGGATGACAGGCGTATATAGTTAAGCAGCCAACTGAAATAGAAGCAGAACAGTGTCTGAGGCCAGGACTCATAAAAAAGGTGCGTTTTCTTTTTAGGGGGCAGTTGCAAAAAATCActaatctgtaaataaaaaataaaaaagtttctCTCTTGGGTCTTATGCTGTCTTACCTTAAGCTAGTTAACAGCAACAGTACCACACTTAACCTACTGTTATAAAGCATCAATCCCAATCCTATTACAGGCAGCAAAATGTGAGCATCTACAGCAGCTTATGGCACTGGTGAATTGAAAAGACAAGAATTACAGTACATTGGAGAGAAAACAGTGTGTCAAAAAGGAAACACTTAAAGATGCAGTATATCACTACTATATAAAGATCAGGCAGCAGTGCATTGGCAACTTGAAGTGGATGGTAGGCACATTTTCCCAGTTAATAGATTATTATACAAGTAAACAACGCAGATTGTAATGAATTCAAGGAGGGGAGGGACCTCAATTGGAGGAAATGTGCATGAATTTCATGTACAACACCTCCACCCTCTGGTTAGGAATACAACCGTGTTCTCTTTTACAACTGCAGCAATTCAAAGGCAGACTGCGGACTCCGATCCTCATCTGCACGGTGTCTGAATGCAGCTTGTGTTAACTGCAGCAGAATAATTTCTTAATGTGGTTCGTAGACTAGATCAAGGGAGAAGGCTGTGAAGTGTGAATTACTGCAGAAAGCAacctttctttcaaaaataaaagaatactgCATCTTTAGGTGAagggaacaaacaaaaagaaaaacattaaggTGCTTGAAAGAAACATGTGTAACAGATTAACTTTCCTTGGTCCAGGCAACAAAGACGAGGCAGTATAGCTAGTACTACTAAAGGAGTTAGAGAGCGTGATTCGGGGAACTGGGGAGTGAGTGGGCGGCCGAGAGAGATGGCAGCTCCAGCCTAGCGCACCAGAGGCGTCTGTTTGAGGGTTATGAGCACGGAGCGCATGCGAGACACGTCCTTGGACTGCTTGTTGGTTTTGGGGTTGAAGTCGCACAGCCGTGCCACCCTCTCCCACTCTGACCCCGGGGTGTCTTCGTCACATTCTTTGAGGAAGGCCTCTTCCGACG

Function

symbol description
higd2a Predicted to be involved in mitochondrial respirasome assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to several human genes including HIGD2A (HIG1 hypoxia inducible domain family member 2A).

NR:

description
PREDICTED: HIG1 domain family member 2A-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011445 False 2101 mRNA 0.38 2 25014819 25018314
TU133710 True 4774 TUCP 0.40 2 25012205 25018332

Neighbor

gene id symbol gene type direction distance location
AMCG00011446 faf2,LOC102776530 coding downstream 8929 24992348 ~ 25003276 (-)
AMCG00011442 NA coding downstream 54559 24915216 ~ 24957646 (-)
AMCG00011436 lrrtm2,LOC107750357 coding downstream 807882 24202755 ~ 24204323 (-)
AMCG00011433 NA coding downstream 909280 24089272 ~ 24102925 (-)
AMCG00011432 NA coding downstream 1011747 23994138 ~ 24000458 (-)
AMCG00011448 LOC107667449 coding upstream 30843 25049175 ~ 25054840 (-)
AMCG00011447 NA coding upstream 37063 25055395 ~ 25071697 (-)
AMCG00011454 LOC103356984,LOC101466388,LOC100710497,LOC102193786,LOC102784017 coding upstream 97225 25115557 ~ 25116417 (-)
AMCG00011456 NA coding upstream 663583 25681915 ~ 25705668 (-)
AMCG00011457 NA coding upstream 711137 25729469 ~ 25730537 (-)
G106885 NA non-coding downstream 21029 24986805 ~ 24991176 (-)
G106862 NA non-coding downstream 93008 24916164 ~ 24919197 (-)
G106817 NA non-coding downstream 430031 24581956 ~ 24582174 (-)
G106723 NA non-coding downstream 1214986 23795680 ~ 23797219 (-)
G106682 NA non-coding downstream 1420896 23591101 ~ 23591309 (-)
G107035 neurl1b non-coding upstream 987647 26005979 ~ 26006456 (-)
G107037 NA non-coding upstream 991188 26009520 ~ 26012447 (-)
G107038 NA non-coding upstream 997652 26015984 ~ 26016680 (-)
G107057 NA non-coding upstream 1076473 26094805 ~ 26127765 (-)
G107082 hspa9 non-coding upstream 1177780 26196112 ~ 26197833 (-)
AMCG00011427 NA other downstream 1177131 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 1194662 23813857 ~ 23817543 (-)
AMCG00011414 NA other downstream 1522563 23393104 ~ 23489642 (-)
AMCG00011409 NA other downstream 1951239 23053313 ~ 23060966 (-)
AMCG00011399 NA other downstream 2258589 22743430 ~ 22753616 (-)
AMCG00011465 NA other upstream 998844 26017176 ~ 26019400 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 1488611 26506943 ~ 26516507 (-)
G107713 NA other upstream 4606752 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 4867884 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 5173241 30191573 ~ 30233509 (-)

Expression


Co-expression Network