AMCG00011447


Basic Information

Item Value
gene id AMCG00011447
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25055395 ~ 25071697 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011447
AACGACTTCACTCCGACTTCAGGGCAGGGAAGCGCGGAGCCGCCATTTTTAGTGAGGGTGGCAAGAGCCAGTGTGAGTCAAGGTACTGCCGGTCCGACCCAGCGCAGCAATGGCCGTGACGTCACCGCTTGAAAAGGCGTGGAATAGAGAGCCAGCAGGACAGGAGGGGAAAGAGCACGAAAACTGTGATTAATGTGAGACATCGGCTTCACGTATTTCAGGACACACcggggatagagagagagagagagagagagagatcgacGTGGGAAACTTTAGTGGCAGCAGAGCAGGAACCACAGACTGAGCCGAGGAAGGCGCTCTACCTGGAGGAAGACAGGCAGGTAAAGGAAGCGCGCCGCCCGCTTGCGGAGACGACACTTTCGCGGCCGTCATGCGGGGCAGGGAGGCCACTGAGCCGCCGAGAGAGACGCACCGCAGCACAAACTTTATTTCGGCCGATTTCGCTTCTCCCCACATCTTCAGCACACCAGCGTGTTAACAACTACCGTCAGGGGCTCGCAACTGCGTTATTAGGATTTGGTACAACCCCAAGCAAAGAATAAGAAAAGAGAGCCATTCTACAGATACCCCAAACTGAACGAAACTAGTTTGTCCCGATTGGACAGGACAGTGACAAGGACGGGTATATGAAGGGAAGGGtacgataaataaataaaaataaataaacagaaatgcgCTCCGGGGTTTAGAAATGAAACTTCAGCTATGACTGTCCGTGTTGCTGTCGGCAAGGTACGCCACGGGTTAAGACTGGAGAAAAGTTGTCAAGAGAAGAAAAACCCGGAATACAAAGTGACAACAGTATACTACTGAACACAACATACGCGAAACGACAGAAGCAAGTTCAAAGAAAACGGCGAAGAAAGGATTTGTGGAGATGGGGTGTGTGTAACTTTGGTTGGACCGGATCGTGGACCTCTCCCACCAGACAGACCAGCCAAGTGAAATCGGATAAAGGGAGCTCTTCACGCAGCAGAAACGCGTCTGGAAATGCTGTCCGCGATCATGAGGAGGTGGTTTTGCAGGCCTAAGAAGTCTGACCGACACCCCCTGGCCCAGTTCTATTATGCTGATGAAGAGGTGAATCGTGTCACAGCAGAGCTCAATGGAGTGGACCTGCGCAAAGACCCCCAGAAATACCTGGTACTGCTCAGCCAGCTCAGAATGAGCCAGGACCGCATGTTGAGGGCCATCGAGCTGGTGATGGAGGACTGCATCTCTGCCCAGAGACAGAGCCGGGACTATCACGTCAAGTTCCCAGACGAAATCCTTCACGAGAACCTGGGAGTGCAGCTGTGGTTTGCCGCTGAGTGCCTGTCAGTGGGCTCCTTCCTGGAGGTGCGCGAGGCTGAGGGGCTGCTGTTGCGCCCCCTAGCAGAGCAGCTCCTGCAGTGCCTGGAACATGCCCGCCTCCAGCTCCGAGAGCAAAGCCTGAACGCCCCGCACAGCTACAGCCCTGAGCTCCGGCAGGCTCTGCTGCAGTATGACCGAGTCTTCTCCCAGTTTGAGCTCAGTTATATCTCCACAGTGATCCCGCTGAAGTCAGCCGAGGAGCTCCAGAGGCAGCAGGAGATTGTGCTGGGCTACTTAAACCAGGAGTTGATTGACGGCTACGAGCCGCTGGTCATGTTCACAATCCCCAGACTGGCTATTATATGCGGCCTGCTGATTTTCCCAGATGGCCCTCTGAACCTCCAGCAGGGACCAGAGGGTATGTCCAGCCTCTTCAGCCCCTTCTACTCCCTACTGCAAAAAATCAGGGATTTGCTTCGCATCCTCACCCAGGAGGAGCTCCACTTCCTGGAGAGGAGCCTGTGTGCGGCGGAGTCCAGCGGCTTCCTGTGCGCGGCGCCCTCGGACGGGGGACGGAGCTCCTTCCCCAGCAGCCTCCCTCCGGTCGACTACGAGCCAGGGTGTGAGGTGCCCGGGCACACGTCATTACAGCCTCCCTCACATGTCTTCCCTGGCCATCCCTGCTTCTCCAGCACCACAGAGAGCCAGTATGGCAACACTGGCATCTGGCCCAGCCATCCCTATTGTCAGGAGGGGGCGGCAGACCACAGACAGCCCCCTGTTTCTCCAGACAAGCCGGACAGTGCTTTCTATGGGGCTGCCTGCTCTCTCCACAGCCCTGCCTTCCAAGAGCAAGGGCAGCCCTGCCAGCTGGTACAAAGCGAACGACAACCACAACATGGACCAGCTTTGGTGCCCAGTTCTGACCTGCAGCCCCACGTCTGTCTGAGCGGACAGGGCTCCGGGGAGCAAGGGAGGTGTGACGCCGATTCCTCTGCTCCGGTCACAGACAGGTTTTATTACTTCCGCTCTCCTGTGGATCGCAGCAGAGCTGGGGCTGGGGCCGGCACCGGCACAGAAggcgaggggagggagaggcGATGGCGGCACAGCGTGATGGCACACAGCTGGTACTCTGGGCAGCCACTTCCCACGGCGCCATCCAGACCAGCCTTCAGAGAAAGACGgTTTGACAGGGTGTCCGAAAATGGCACCGGCACCAGAGGCCCAGTGGACCACGCCACACGCAGGGTGAGGACAGAGCTGCGGGCACGATACAGCAGCAGCGGTGACATGATCCACAGGCTGTTTGTGTGCATCTCAGGAGTTGCAGACCAACTACAGACAAACTTTGCCAGTGACATGCGAGCGATCCTGAAGTGCGTGTTTGAGCTCATCATCTCCCGTGACGAGACATGGGACAGAGCCCGGACCAACTCGGCTGGAgaggacggagagagagagcaggaggaagacTCGAGTCCTGGGCCGGTGGAATGTGAATTGTGTGAAGACCTGAACACTGGAGTCGCCGATATGGGCAACATAGGAGGTCCACCGGTCTGGGTCCCTGACAGCGCCTGTAACCACTGCACCGCCTGCCAGGCCCCCTTCACCCTCCTGCGCAGACGCCACCACTGTCGAAGCTGTGGCAAGATTTTCTGTTCGCGATGTTCCCCCCATGAGGCACCACTCCCTCGCTTTGGTCAGATGAAGCCGGTTCGAGTGTGCAATCACTGTTTCAACTTCCATATTGTTGGAGAAACAACACCGCTTTAATGAAAGCTATAGGAAAATGACTTCATctgggggagagaaaaaaaaaaaaaaacatttttggggATCTGCATAGACACATCTGGACACTCATCCAGACAGACAATGAGAGCTGTGTGTCAGCATTCCCTGAATATCACTTGTTCTGCTCGGTTGCTACTGGCCACTCAAGGCAACTGTTGAAATGCAGAATAACACTTTTGGTAGTATCTCTTCCTGTCATTCACAGAATTCAAATTcccatgcatttatttccagagTGTTGAAAATCTTCAATTTCTCCTTTCTTGACACAcatctctgttttatttttaaagtacaatTCCTAAACCTCCTATAGACAAATTCTTTTACAGGTTTGTTTTCTACTAATCCTGAAACCTGGGTTCtgcaatttgtgtttttcagtcggattggaaagaaaatgtatgtggCAAATCTGTTTTGATATTTGTCaaattttcctttttgaaattcTGTAATTACGGATTTGTGATCCGCAATGTTTGCGaacccccttttgccaccagtGATGTAATGATGTAATTTATAGTTTAGTCGCACAattaaagcatattttattaaaggatatcgaaattatatttaaaaaggatgcatgtttgttttcaaatacaaatctaaaactAAACGTGTGTGATGTACTCTAATGATGGGTGGGATACAGGATCAGTCAATCAAAGCCTGCATATTGACCCTTGGGTGCTATGGACAAAAAACCTATATGTGGGTCACTGAATTAAACATATTTGCAGATattcaaaacaatgaacaaacaaaatgtatctaacagaaatgtattgtgATTTACCAACAAGCTGTACATCACGGATTATgcttttcaaattaactatCTGTGTACACTTATTAACATGTAATATACAATATGACATGACAGTAATTCCAATAGGATTTACGTGGAGGACAccattttatagttttatattgcCACATAATAGGTCTCAtatcaacttttttttattttcacacaaatacattgaaacTGATCAATTTGGTTCAGGTAGATGTAggctatatactatatattcaCTAAAAATGCATCACTCTCCTACCTCCATTTACCCCTTATGTTATCACCATGAACAGGCTGACGAGATCTCTTTCCGATCACGGGTTTTTTGAATTTCAAACATCTGTTTTCCCGCCTgcctgtatttttaaacagatcttaaaatgtcacatgtataatgtgtttgtgtgtcac

Function

GO:

id name namespace
GO:0005768 endosome cellular_component
GO:0016020 membrane cellular_component
GO:0043167 ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011447 True 4336 mRNA 0.50 14 25055395 25071697

Neighbor

gene id symbol gene type direction distance location
AMCG00011448 LOC107667449 coding downstream 555 25049175 ~ 25054840 (-)
AMCG00011446 faf2,LOC102776530 coding downstream 52119 24992348 ~ 25003276 (-)
AMCG00011442 NA coding downstream 97749 24915216 ~ 24957646 (-)
AMCG00011436 lrrtm2,LOC107750357 coding downstream 851072 24202755 ~ 24204323 (-)
AMCG00011433 NA coding downstream 952470 24089272 ~ 24102925 (-)
AMCG00011454 LOC103356984,LOC101466388,LOC100710497,LOC102193786,LOC102784017 coding upstream 43860 25115557 ~ 25116417 (-)
AMCG00011456 NA coding upstream 610218 25681915 ~ 25705668 (-)
AMCG00011457 NA coding upstream 657772 25729469 ~ 25730537 (-)
AMCG00011459 NA coding upstream 708265 25779962 ~ 25781092 (-)
AMCG00011463 ergic1,LOC107679115,LOC107660430 coding upstream 805799 25877496 ~ 25898827 (-)
G106885 NA non-coding downstream 64219 24986805 ~ 24991176 (-)
G106862 NA non-coding downstream 136198 24916164 ~ 24919197 (-)
G106817 NA non-coding downstream 473221 24581956 ~ 24582174 (-)
G106723 NA non-coding downstream 1258176 23795680 ~ 23797219 (-)
G106682 NA non-coding downstream 1464086 23591101 ~ 23591309 (-)
G107035 neurl1b non-coding upstream 934282 26005979 ~ 26006456 (-)
G107037 NA non-coding upstream 937823 26009520 ~ 26012447 (-)
G107038 NA non-coding upstream 944287 26015984 ~ 26016680 (-)
G107057 NA non-coding upstream 1023108 26094805 ~ 26127765 (-)
G107082 hspa9 non-coding upstream 1124415 26196112 ~ 26197833 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 37063 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 1220321 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 1237852 23813857 ~ 23817543 (-)
AMCG00011414 NA other downstream 1565753 23393104 ~ 23489642 (-)
AMCG00011409 NA other downstream 1994429 23053313 ~ 23060966 (-)
AMCG00011465 NA other upstream 945479 26017176 ~ 26019400 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 1435246 26506943 ~ 26516507 (-)
G107713 NA other upstream 4553387 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 4814519 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 5119876 30191573 ~ 30233509 (-)

Expression


Co-expression Network