AMCG00011450


Basic Information

Item Value
gene id AMCG00011450
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25071737 ~ 25093488 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011450
CAGCACTCCGCCATATTGGCTGTTGTCTTGCCCGGAGAAGGTAGGCAAGGCTGGTGGTGCTGGAAGAATCGAAAGTGTGGATTTTTCACCGGAGAAACTGGTACAAACTGGGCCAGAGGGTCTCACGGAAACTTGTAGTATGGCGAGGAAGAAAAGTAAGCAGCAAGGAGCCGGGAATAAGGAGCTGGGGAGCGGACAGCAGAGCCAGGCGAAGAGCCCCGTCTCTCCCGGCGATGCAGCTGGCGGTGGCGGAGATGCAGGACTGGACAGGCTGGCCAAGGCAAATCAGCCTCTGCCCATTGCCGCAGCTCAGTCCATGCACACCTGCTGTCTTCTGTGCCACCGCGAGTTCAAGGACTGGGGGGCGAACCCTGCCAACGGATTACCTATCCCTGGGGTGAAGCTGGGCGACGCCGTGCCAGCGCTCTCGCAGGCCCTGCTCAAGGAGGTGCCGGGCAGGAAGCTGGCAGACGCAGTGCCGTCACTTTCGCAGTCGCTGCTGGGTGAGGTGCCGCTGTGGATCTGTCAGAGCTGCAGGAAGAGTGTGGAGGACGAGGAGAGGAGGGCGGCGCAGGAACAGGCCCTGGCGGTGTCCCTGTCGCACTCCTCCTGTAAGGCGCAGAGCTGTGGGAACGGTTTCCCGGAGCAGAGCTCTGTGGAGTGGGACCCCAGCTCCTTCCTGTCGGCACACAAGCTCTCCGGACTGTGGAACTCGGCTCACACGAACGGGGGGGCGCACTGTAACCACGGCGGCGCCGCACACACGCAGCAAGGTGGCACAGGGGGACCAACCTGCCATGAAAAAAGGCCTTCTCACGAGGCTCCTGGCAAGTCTGCAAAGCCTGCTGGGACCAAGGTCTGCCCATACAGTCATCCAGCATCCCAGAACTCCAGTGGGGTGGCCCCGGGGTCCCTGCACTCTACCTCCTCTGATCTGTGCAAGACCACCCCCAAGCACTTCAAGACCATGTGCCGGAGACCTACCCCTCCAGgtGAAGCCTTCCACTCCACTGAGCACCATCAACACTCAGACCTGGCAGTGCCACCCAACAGTCCCACTGGGCTCTCTTCCCAGCATTCCTCACTGCTCCCTCCCAAGCAGTCTCCCAGTCAACATGTGCATATGACCTCACCCAGCCCGGGGCTGGCGGCACACGCGCCATTCACTCCTTTGGTACAGAACCTTCATGTGCCAGTATCAAAGATGGCTGCCGGACCAGACAACCCTGCTTCCCTACACAAGCCCGGAACGTGCAAGAACTCCCACATTCCTACAGTGAACACGCAGCACACTAAACTGACAGCCTCCCCAACAGGGTGTACCCATCCCTGCAATGGACACAGTAATGGAACGGTCACCTCTCCCACCGTGGGACACTTACCTTCTGGTGCCTGCAGggaCCAGGCGTGTAAAGGACACAAACTGGCGAACGGGACGGTCTGCCACCCGCCCTGTGAGCTGGAGGAGGGGCTGGGGGAGGACGAAGACAGCAGCTCAGAGAGGAGCTCCTGCGCCTCCTCCTCTACCAACCAGAAGGACGGGAAGTACTGTGACTGCTGCTACTGCGAGTTCTTCGGCCACAACGCGCCCCCTGCTGCCCCCACGAGCCGGAACTACGCGGAGATCCGTGAGAAACTGCGGTCCCGCCTGACCCGGCGCAAAGAGGAGCTGCCCCAGCGGCAGGACTCGGACCCGGCCGTGCCCAGCGCCATCGACCACCGGGACGTGGACGAGCTACTGGACTTCATCAACAGCACCGAGCCCAAACCCGTCAACAGCGCCAAAGCTGCCAAGAGGGCCCGCCACAAACAGAAGAAGAAGgagaaggagaaggctCAGCAGGGCAGCAATGAGCCCCCGCGCTCCGACCCCCGGGCCTCCCCTCCtgggcagcaggaggaggaggatgaggaggaggatgtGGCCGCAGGGGATGGGGAAGCAGGCCGGCTCCTGGAGTGGCctcagctggagctggagcgcGTGAACAGCTTCCTGACGAGCCGGCTAGAGGAGATCAAGAACACTATCAAGGACTCCATCCGCGCCTCCTTCAGCATGTATGACCTCAACCTGGACGTCAACGACTTCCCCAAGAAGGCCGCCACCCTGGAGGGCAATCACCTGCTGTCCCACCTCAACGGCTCCTCGGAGCTGCAGCAGATCGACCTGGACCTGTCCCCGCTCACCCTGGGGAGCCTCAAGAACCACCTGGTGAACGGCCGGGAGGACCTGGTGCCAGGAAGCTGCCCCGCGGCTCAGGACGTCCAGCGGCTCAACGCCACCCCCAGCCTGTCCAAGCTGATCCGTGTCCGCTCTCCAGAGAGGAGCCCTGCCTCCAACACCTCTCCCACCCTGCAGGGTCCGCCTGCAGCAGCAAAGATCAAGGAGGAGGGTCCTGATCTGAAAGTCACCCCAGGGGCCACCGGCAAGCAGAGGAAGGGAAAGAAGCcgccgcagcagcagcagccgccacCACCGTTGccaccacagcagcagcagcctcagCAACAGGCTAAAGTTAACAAGCCTGCGTCTGGAAGCGAGCCACCGAAAAACAAGGACACCCAGGGGAGGGCAGCAGGGGCGTGGAGCAGCTCCAAAGCAGGGTGCAAAAATCCGGCCCAGGCCCAGACAGTCGCCGAGCCCCACAAGGGCCAAGCGGCATTGGGGAAGAGGCTTGAAGAGGGGAAGGGGCCCAGGCAGGCTGTCAATGGCATCCCTGAGTCTGGTGGCTGCAGGCAGCCGGAGAAGAACGGAGCCGACATCCGGGACGGAAAGGGCGGCTGCAGGCTGGATCAGGAACCTGAGGCCAGAACCAACACCCTCCCTCCCACCGGCTCTGCTCAGCCCAAGGGAAAGagcaaaaagaacaaaaacaagatggaCAAGTCCAGCAGCTCGATCGATGACGTGTTTCTCCCCAAAGATCTGGATGGGACCGAGATGGATGAAATCGACCGGGAGGTTGAATACTTCAAGAGattCTGCCTGGATTCTGCCAAACAGACACGACAGAAGGTGGCTGTGAACTGGTCCAACTTCAGCCTCAAAAAGGTCCCTTCCAACGCAGCTCAGTAGGGTGGGTGTCTCGGGGGAAGCGGGGGTTAAGCGGCACGGCCCAGCACTCGCCTgcctcccttcctctcctgcTGCCGCCACCTCCTCCTCCCGTTCCCCTGCCCTCCTCCCACTGACGACATCCCAACACGACAGCCTGAGTGAAGCCAGACCTGCCGTTGGCACTTACCGGACTGGGACACGAACTGCTCCGAGATGcttcttcctccttctcctgctcctcctcctcagagCCAAGGAACCCATCTACTATGCTCTCCAGAGCTGCCTCAGCCTTTCTATgacttgttttaattattattatttttttacatcacCCCTGAGGTCCCAAGGCTTCACCCATCTGCAGGACTCTCTGTTTCGCGACCATTGAGCCTCTCGCTCAGGACAGAGGTGGCTGGCAGCTGCGGCATCCCTCACCCCCATGTTTTAGgttctctctcttgttttaCCAAGAAAGCAATCCCTTTACTGTTAGATTTCAACggtctttttaatttaaatttttactAAGTGGCCCTCTGGTTTGGTTGTGACCACACGCCATCATGTGTTTAATGGACTGCCTGAATTTGGATCCAGTTatgaaattatttgtttctgtgtacatctgtttttcctttcattctggTTTGCATCAGGTTTTACACTTAAGACTCAATACCAAGAAGATTTATGGAACTATTTTGCTTTTAGGAGGGGAGAAGGGGGTTGATAAAGTATAGGTCACTGGGCAAACtcaaggaaaaactaaaacaggcAGTAGTTTGACCTGGTTTGCAAAGGGTAAAGGAACTTTTGTGGACTAGAAATACAACCATAAACAAGCCCATCCAATCACTGTTACTTTGAAACTCCTCACTCATTGGTTAGTTTTCACCGTTCTGAAGTATTGAGAAGTGACTTTGCAAACCAGTGCCATCTGCTGGTTATTCTGATGCCCTATTTCCATTCTGTAAACAGTGCTTGATCGCTGTCACTCTTCATTCGCCGCTGCATTTTGGAATCCTGATGCTGTGCATTAGCTGGGGATTGTGAATTGAGTATACAGTGATTCACTCTGTTTTGCTGGAGATAATGCGAGACAAATTAGGACGTTGATGTTTCTAAGTGACTGGAAACCTTCCCACCAATCTGATCGACCGGCCAAGCTCTCTGTAAACCGCAGAGCAAACTGACTATCCATCCAAATCAACGAACACTGCTTACATTATGCAGTCTTTCCATGAGCTCCCACATCCCAtgtttttaaagtcattttGCAAAAGAACAAACCTGACATGAATTACAACACTAATATGAAATcagttgatttaaaaataagtctCTGTGTggagtatttaaaaacatttttaataatttgttaaaagAAATTGATGTAACAAGAATGAAACTGGATTTCTCTACTCTCTGTTGCATGAAATTTTAGAACGACAATGTTTCCCCACGTTTCCTGtagattcatttgtttttaacctcatagttacagtaaatgttgtCAAGCCTAAACTTTGGTATGCTACTGAAGCTTAATACCTCCTCCACAGTCCATTCAAATCTATTTCTGTACTGTGATTGCTCACGGATTGCTGTTGCTGCCAGAACAATAACTAGAGCTCCATTCCCGACCGTGTACTTCAGTAAAGTGATGCAACCGTTTATACTGCATGGCAGCCTCAAAGAATTGTGTTGTATTATCTTTCAGCACTTAAAAGCAGCATAGCTTTTGCAGTTACGGTACGCAGTTACTTTCACTTTATGTTTTCCCTGtccttgtgttgtgtgtctgcttACACAAAGCTACTTCAGTGAGGTTTTGTCACCTCGACAACAGTGCTACAACTTCAGCCTGGATTTCTAACTACTAGCGTGTTTTTCCAGTAACGGTACAATGTTCACCATATATCAGAGACCCACTCCCAGATGTCAAGTGGACCATGCGATCTTTTGGGCCCTATTCCATCTCCTTTCTCTTGTAGCTGGGCATCTCCTTCCAAAAAAAGGACGACATTGAAAAAGGGGGGTTTgggttatttaaaaacaaaatgctttctgaGTCTGACATGAatgagatgtatttttttttatctaatttgaaattgtttttttgtttttctttgttttttgtgttttcatattttacaagATCTCTGGTGCTATCCAGGTTATATTAAACTACAAGACAATATCTTAAAAGTTTGGAATGTAGATTTATACTGTACCATTAAGAGCCAAGTGTAGGTTGGcttctctgttttttattattattcacttttgATACTGTGAAAAATCTTTCGTTCTgaaagattaaaacaatacagttttgacaaaagaaaaaaca

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011450 True 5423 mRNA 0.53 10 25071737 25093488

Neighbor

gene id symbol gene type direction distance location
AMCG00011444 prelid1 coding upstream 24523 25044205 ~ 25047214 (+)
AMCG00011443 cltb coding upstream 56868 25003664 ~ 25014869 (+)
AMCG00011440 rnf44 coding upstream 85014 24971547 ~ 24986723 (+)
AMCG00011441 NA coding upstream 154797 24915075 ~ 24916940 (+)
AMCG00011438 NA coding upstream 184976 24881356 ~ 24886761 (+)
AMCG00011451 ddx41 coding downstream 1041 25094529 ~ 25105105 (+)
AMCG00011449 NA coding downstream 12840 25106328 ~ 25114493 (+)
AMCG00011453 NA coding downstream 76012 25169500 ~ 25170670 (+)
AMCG00011452 NA coding downstream 77220 25170708 ~ 25171196 (+)
AMCG00011458 NA coding downstream 668348 25761836 ~ 25766078 (+)
G106906 NA non-coding upstream 22590 25047524 ~ 25049147 (+)
G106874 NA non-coding upstream 80500 24986838 ~ 24991237 (+)
G106863 NA non-coding upstream 128059 24919851 ~ 24943678 (+)
G106871 NA non-coding upstream 130914 24939022 ~ 24940823 (+)
G106742 NA non-coding upstream 1100554 23941012 ~ 23971183 (+)
G106946 NA non-coding downstream 244064 25337552 ~ 25337767 (+)
G106947 NA non-coding downstream 277991 25371479 ~ 25371745 (+)
G106961 NA non-coding downstream 572636 25666124 ~ 25667782 (+)
G106966 NA non-coding downstream 580928 25674416 ~ 25677419 (+)
G106973 NA non-coding downstream 604764 25698252 ~ 25720586 (+)
AMCG00011430 dctn4,LOC107749746,LOC106604160 other upstream 1226826 23835819 ~ 23844911 (+)
G106711 zgc:175280,slc7a1,LOC107719755,LOC107702889,LOC107557764,LOC103353344,LOC106563607 other upstream 1318735 23748674 ~ 23753002 (+)
G106618 NA other upstream 1715178 23356062 ~ 23356559 (+)
G106613 NA other upstream 1729972 23341308 ~ 23341765 (+)
G106242 NA other upstream 4704514 20361208 ~ 20367223 (+)
AMCG00011455 unc5a,LOC107677380,LOC107653334 other downstream 514498 25607986 ~ 25662179 (+)
AMCG00011476 NA other downstream 1262679 26356167 ~ 26360775 (+)
G107202 NA other downstream 1676950 26770438 ~ 26771214 (+)
AMCG00011488 NA other downstream 1724564 26818052 ~ 26842792 (+)
G107394 NA other downstream 2618718 27712206 ~ 27727867 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008171 fam193b coding NC_007125.7 CM002898.2 49944368 ~ 49992709 (-)
grasscarp (Ctenopharyngodon idella) CI01000000_02622249_02636433 FAM193B coding CI01000000 null 2621937 ~ 2636482 (+)