AMCG00011457


Basic Information

Item Value
gene id AMCG00011457
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 25729469 ~ 25730537 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011457
AACAGAGATGACTACCCCCgtttcatattttgttcaaaCTGCACCTTATGAGCTGTCATTAAGCAGGATATCCCTAAACTTCACAGATTATGAATTTCAGAATTCAACTCAAGAGATACCGAGCTATCAGTGCATCAGCTCCTCCAGCTTCCAGTTTGTCCTTCTGCCAATTATCTACAGTGTAGTATTTGTCTTGAGCTTCCTTGGAAATGGAGTGGCGTTGGGATATCTTTTAAAAAAGACTGCATGCATGGAAAACTTTTCCTCCAAGTCCTGGAGTGGGAGGCTGGTGACCATCAACTTACTGACCTCCATAGTGGGCTTCTTCATACCCTTCAGTGTCACACTGACCTGTTACGCTCTGATCACCAAACGGATCCTTCTCATGGCTCAAGGGAAGCAGAGCGCCCAGCACTTGAAGAAAAAGGCGCTGGGAACCATACTGTTGGTAATCTGTGTGCTTACACTCAGCTTCCTGCCCTTCCATGTCATCCAAGTGCTGCACTCCCTGGCTCGTGGTGGAGTTCTCCACAGCTTTGTCTTGCTTCACTTCACCTGTGGGGCACGAAGGGTCATGATGGGTGTAGCCAGTCTGAACAGTTGCCTTGATCCACTCGTATACTACTTCAGTGCGGAGGACATCCGCGTCGAGCTGCCGTGTTTCTGCAAAAAGGGCATCAAAACATCTTCAGAATCCACATCCAATAAC

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011457 True 709 mRNA 0.48 2 25729469 25730537

Neighbor

gene id symbol gene type direction distance location
AMCG00011456 NA coding downstream 23801 25681915 ~ 25705668 (-)
AMCG00011454 LOC103356984,LOC101466388,LOC100710497,LOC102193786,LOC102784017 coding downstream 613052 25115557 ~ 25116417 (-)
AMCG00011447 NA coding downstream 657772 25055395 ~ 25071697 (-)
AMCG00011448 LOC107667449 coding downstream 674629 25049175 ~ 25054840 (-)
AMCG00011446 faf2,LOC102776530 coding downstream 726193 24992348 ~ 25003276 (-)
AMCG00011459 NA coding upstream 49425 25779962 ~ 25781092 (-)
AMCG00011463 ergic1,LOC107679115,LOC107660430 coding upstream 146959 25877496 ~ 25898827 (-)
AMCG00011470 hdac3,LOC107688598,LOC102780161,LOC107746152 coding upstream 383332 26113869 ~ 26120015 (-)
AMCG00011469 NA coding upstream 408429 26138966 ~ 26162878 (-)
AMCG00011474 NA coding upstream 460589 26191126 ~ 26195850 (-)
G106885 NA non-coding downstream 738293 24986805 ~ 24991176 (-)
G106862 NA non-coding downstream 810272 24916164 ~ 24919197 (-)
G106817 NA non-coding downstream 1147295 24581956 ~ 24582174 (-)
G106723 NA non-coding downstream 1932250 23795680 ~ 23797219 (-)
G106682 NA non-coding downstream 2138160 23591101 ~ 23591309 (-)
G107035 neurl1b non-coding upstream 275442 26005979 ~ 26006456 (-)
G107037 NA non-coding upstream 278983 26009520 ~ 26012447 (-)
G107038 NA non-coding upstream 285447 26015984 ~ 26016680 (-)
G107057 NA non-coding upstream 364268 26094805 ~ 26127765 (-)
G107082 hspa9 non-coding upstream 465575 26196112 ~ 26197833 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 711137 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 1894395 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 1911926 23813857 ~ 23817543 (-)
AMCG00011414 NA other downstream 2239827 23393104 ~ 23489642 (-)
AMCG00011409 NA other downstream 2668503 23053313 ~ 23060966 (-)
AMCG00011465 NA other upstream 286639 26017176 ~ 26019400 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 776406 26506943 ~ 26516507 (-)
G107713 NA other upstream 3894547 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 4155679 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 4461036 30191573 ~ 30233509 (-)

Expression


Co-expression Network