AMCG00011469


Basic Information

Item Value
gene id AMCG00011469
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26138966 ~ 26162878 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011469
GCACACTATAGGAGGTGGGATGGGTGAGAGCAAGACTCGGCAGGGGAAGTATTACTCAAAACGcacaggagaaaaaagaaaaaagaaaagaaagtgggCAGAAAAAGAGAATCCGGACTGAattcaaacaagaaaacaaaaggagcGGAAAATGCAGCCTCCTCCTCGCAAGGTGAAGGAGACTCAGGAGGCGAAGGTGGCTTTTGCAGAACAAGTGGCCAGACTTCAGAGCAAACACCAGCAGGAAAGCGAGCTCCTGGAAGAGATCAGGTCCTTCAGCAAGCAGAGGGCTGCCATCGAGAAGGAGTACGGTCAGGCTCTGCACCGACTGGCCACACAGTACCTGAAGAAGGACTGgcacagagggaggggggaCAGCGCTGATGCCAGTAGGAGTGTGTTTGCGGTGTGGAGGTCTGTGATCGAAGCCACCGAGCAAAGCGGCCTGTCTCGGCTCAGCGCGGCTGAGGGCTATCGCTCCCTGACAGCCGAGGCCCTGAAAAGTCTGCGTGTTGCTAAGGAGCAGCGCACCAAAAAGGGTTTGGAGCAGCTGCAGCGCGTGCAGGGGGAGCTGGTGGATGCGCTGAGGGAACTTAACAAGGTGAAGAAGAGGTACTGCCAGCTGGAGCACATCGCTGATGTCGCCAGGGAGAAGGCCGCTGATGCCCAGGCAAAaTCTAAAAAGAACGACCACGGACTTTTCCACTTTCGGACAAGCCTGCAAAAGCTGTGTGTGAAGCTCAACGCCCGCCTGACCGAGTGTGACCAGCAGCTCACAGAGTCGCGTAACGAGTACCTGCTGACGCTGGCGGCAATCAACTCTCACCACGGGCACTACCACGCCACCGACCTGCCCGCCCTAATGAAGGTCATAGATGGCGACCTGTACGACCAACTGCGTCAACAGTTCACTGTGCTGTGCAGGACTGAGATTGACACCTGCCAATCAACACAGACTGCCTTCTGCAGGATCAGAGAGGACTCCACCCAGGTGTCCAGGGAGCACGACCTCAAGCTCTTTCTCCAGGACAACCCAGCCTTCACCAAGGGCTCTGTGTTTCACTTCCAGGCGGCTCCCAATGATAAGGTGAGCAGTCTGGTGCATCGGAGCAGCTCCCAGGAAGGAGTCAGCTGCCTGGATAAGGAGGCACGGAAATGGGCCACCAAAGCAGCAAAAGACTACAAAATCATCACCCACGGGGAGAGAGTGCTACAGACCCTGGAGAGGCGGCGGAAATTGGTGCCGGAGGACGAGGGCGCCGGAGTGGAACAGAAGATGGAGGAGGTGAAGGAGAGTCTGAGGAAGGCGAAGGTGAGCCGGGTGAAGGCGGAGTCTCGGCTGGCCCTGCTGCTCTCGGCAGGGGTTGATGTGGAGCCCTGGGTGTCCAGCGCCATGAGCCAGGCCAACGAGGagctggagaaagagaggaggctCAGCGAGGCCCGTCTGTCCAATGGAGACATCTCCCCCATGGGGGACGAATTTGAGTTCACCGATTTTGATGACTTTGATGAGAACAGTGATATTTTCACAGAGGTGTCCTCAGGCCCCTCCCCACAAGGCTACCCCCTGCCATGCCAGGTTCTCTACAGCTACCAGGCATGTCAGGCTGATGAACTGTCAATCACAGAGGGGGAGGAGCTACATGTGATTGAAGATGGAGACATGGAGGACTGGCTGAAGGCACGCAATGCTGCAGGCCAAGAGGGCTATGTCCCTGAGAGGTACTTGCACTTCCTCCGGACGTCTTCGGAGGGAGCTGTGCCGCAGAGAGTCCCAGGGAGCCTCCACACTGACTGGCCCTCCGGCACCTCCGAGACTTCCCCGGACTTCTACGGGCAGGACCATTCAACACACACAGGAGGGCTGGCGCGGGCGCTGTATGAATACTGCGGGCAGAGCGCTGAGGAGCTGTCCTTTCCGGAGGGGGCGCTGATCCGCTTGCGGCGCCGTAGCTACGGGGACGTGGACGACGGCTTCTGGGAGGGCGAACTGCACGGCCGGGTGGGAGTGTTCCCCTCGCTGGTGGTGGAGGtgctgggagagggagatgaggaggaggaggaggatgaggaagaggaagtgAGTGTTCCGACCCCGACCCCAACCcctcctcccttctcccctCCTGTCCCCATCCTCAATGCCTCTCCGGGACCACACTGCTCCTCCCCTGCTCCAGGGACCTGGTCGGCACACAGTACGCCACCCAGGGGCCTGGAGGATCGACTGCAGGTGGTGCCGCAAGACATGCTCAGACTGTCGGACAGCAGAGCAGACAGCGGCAGCAGTGCGCACAGCTCCCCCGACCTCTCGGCCCGCAGGATTCGTCCAACACGAGCGCCCCCTCTGCCCCCAGGACACCGACGCTCCCCTCTGCCCTGAAGACACGGGCACCCTGACTGAGAGTGGTGGGCACCGGGCCGGGCCTGGGCACACCACACTCAACCCAGTGGCCTCTCCTCAGTGCCCGGTGTTGGGCGCCCAGTCagcagtgtatatacagtggaCAAAATGTCAGGAATTGCAGTTGTTGATTCACTGtcttaacatttcaattaatcagTCAAGTTTGGCTcagaatgttttattcatgtctgtattgttcttttttatttaacattatttgaattatttaacgtgtaaaacattgtattatttttattattgaaggTTATGCATTTAGTTTCCCATTTCAGATATTCTGTGTCCTAAGTTTCAGTCAGTCGTTCTGGTTCAAATGATCCATACTTCCAAATACAATCAGCAAGTGTTTACAGATCTAGTCTATATTGTGATCAGTTTTTAGGTTAAAAATGCACTGAACTCTGCACccaggtttatttttgtttgtttatcttcctCTGTTAGGTGATCAGGGGGTTTAGGTCTACACAGATCTTAACCCTTATAAAGAAACCGGAATATTTGTAGTCTgctgtatctatatatacatctaaTAGTATTATACAATCTTTATTGCATATTACTCAAAGCCTAAGATAAAAGACTATACATATGGACAGTATTCCACCTTACATATGCAGTGATCTTGCCAGGAGGATCTCACAATTAACACCACATTTAGGCCCACTTTATTAGACAAATTATGCACCTATACAAAATTCCTGGCCCATgtaggtattattattaaaagggaGAACAGaagggtgttttttgtttaaaatatagtaAGTTCTTCAGTTCCAGTTCAGTAAACCCTCTTTGAGTTgtgatgtctgtgtgtgtgtatgtatatttgttttatacaaccAAGACTGTGaatgttttaagtttgtttctgtgaaatatGCAAAGTTGCAATTGGGATAGGCAATGCTGGCGAAATgccaataataaaatcataaagaCACTACATTGAGTTTGGCATGGCTATACAATGGTGCTTTG

Function

GO: NA

KEGG:

id description
K20125 FCHSD; F-BAR and double SH3 domains protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011469 True 3412 mRNA 0.53 20 26138966 26162878

Neighbor

gene id symbol gene type direction distance location
AMCG00011470 hdac3,LOC107688598,LOC102780161,LOC107746152 coding downstream 18951 26113869 ~ 26120015 (-)
AMCG00011463 ergic1,LOC107679115,LOC107660430 coding downstream 240139 25877496 ~ 25898827 (-)
AMCG00011459 NA coding downstream 357874 25779962 ~ 25781092 (-)
AMCG00011457 NA coding downstream 408429 25729469 ~ 25730537 (-)
AMCG00011456 NA coding downstream 433298 25681915 ~ 25705668 (-)
AMCG00011474 NA coding upstream 28248 26191126 ~ 26195850 (-)
AMCG00011475 csnk1a1,LOC106604944,LOC107593197,LOC106611977,LOC107554841 coding upstream 157143 26320021 ~ 26334761 (-)
AMCG00011482 NA coding upstream 185710 26348588 ~ 26362055 (-)
AMCG00011480 NA coding upstream 199513 26362391 ~ 26368116 (-)
AMCG00011481 NA coding upstream 206443 26369321 ~ 26369867 (-)
G107057 NA non-coding downstream 11201 26094805 ~ 26127765 (-)
G107038 NA non-coding downstream 122286 26015984 ~ 26016680 (-)
G107037 NA non-coding downstream 126519 26009520 ~ 26012447 (-)
G107035 neurl1b non-coding downstream 132510 26005979 ~ 26006456 (-)
G106885 NA non-coding downstream 1147790 24986805 ~ 24991176 (-)
G107082 hspa9 non-coding upstream 33234 26196112 ~ 26197833 (-)
G107166 NA non-coding upstream 148965 26311843 ~ 26329609 (-)
G107167 hnrnpa0,LOC105905838,LOC107664751,LOC107567479,LOC107598338,LOC107756703,LOC107741073 non-coding upstream 225334 26388212 ~ 26409375 (-)
G107232 NA non-coding upstream 670687 26833565 ~ 26833850 (-)
G107233 NA non-coding upstream 675289 26838167 ~ 26842786 (-)
AMCG00011465 NA other downstream 119566 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 1120634 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 2303892 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 2321423 23813857 ~ 23817543 (-)
AMCG00011414 NA other downstream 2649324 23393104 ~ 23489642 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 344065 26506943 ~ 26516507 (-)
G107713 NA other upstream 3462206 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 3723338 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 4028695 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 5967616 32130494 ~ 32205554 (-)

Expression


Co-expression Network