AMCG00011470 (hdac3,LOC107688598,LOC102780161,LOC107746152)


Basic Information

Item Value
gene id AMCG00011470
gene name hdac3,LOC107688598,LOC102780161,LOC107746152
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26113869 ~ 26120015 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011470
ATGAAACCCCATcgcctctctctcacacacagtctGGTTCTACACTATGGTCTCTACAAGAAGATGATGGTGTTCAAGCCGTACAAAGCCTCCCAGCATGATATGTGCCGTTTCCATTCGGAGGATTACATTGACTTCCTGCAGAAGGTCAGCCCCAACAACATGCAGGGCTTCACCAAGAGCCTGAATGCCTTCAACGTCGGAGACGACTGTCCTGTGTTTCCAGGTCTGTTTGAGTTCTGCTCTCGGTACACAGGGGCCTCGCTACAGGGAGCAACACAGTTAAACCATAAGATCTGCGATATTGCGATCAACTGGGCTGGAGGCCTCCACCATGCCAAAAAATTTGAGgcGTCTGGATTTTGCTATGTGAACGACATTGTCATCAGCATTCTGGAGTTGTTGAAGTACCACCCACGCGTCCTATACATTGACATCGACATTCACCACGGTGACGGCGTGCAGGAGGCCTTTTACCTCACCGACCGCGTCATGACCGTGTCCTTCCACAAGTATGGGAACTACTTTTTCCCTGGGACAGGTGACATGTATGAAGTGGGTGCGGAGAGCGGTCGATATTACTGCCTGAACGTCCCGCTGCGAGATGGGATCGACGACCAGAGTTACAGACAATTATTCCAGCCAGTCATTAAGCAGGTGGTGGACTTCTACCAGCCGACCTGTATTGTTCTTCAGTGTGGGGCTGATTCTCTGGGCTGTGACAGACTGGGCTGCTTCAATCTCAGTATAAGGGGCCATGGGGAGTGCGTGGAGTTTGTGAAGAGCTTTAAAATCCCCCTGCTGGTGTTGGGAGGCGGAGGATATACCGTCCGTAATGTGGCTCGATGCTGGACCTACGAGACGTCGCTGCTGGTTGAAGAGTCAATCAGTGACGAGCTGCCGTATAGTGAGTACTTTGAATATTTTGCCCCAGACTTCACACTGCACCCTGACGTCAGCACCAGGATAGAAAACCAGAACTCCAGACAGTACCTGGAGCAGATCCGACAGACAGTGGGTGAGAATCTGAAGATGCTCAACCACGCGCCCAGTGTCCAGATCCACGACGTGCCCTCCGACCTGCTGAGCTACGACCGGACGGACGAGGCAGACCCAGATGAGAGAGGCTCAGAGGACAACTACTCCAGGCCAGAAGCACCCAATGAGTTCTACGATGGTGACCATGACAACGACAAAGAGAGCGATGTGGAGATCTGA

Function

symbol description
hdac3 Predicted to enable chromatin binding activity; histone deacetylase activity; and transcription corepressor activity. Acts upstream of or within several processes, including angiogenesis; liver development; and posterior lateral line development. Predicted to be located in cytoplasm and nucleus. Predicted to be part of histone deacetylase complex and transcription repressor complex. Is expressed in several structures, including axial blood vessel; blood vessel; digestive system; otic vesicle; and sensory system. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human HDAC3 (histone deacetylase 3).

NR:

description
PREDICTED: histone deacetylase 3 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070932 histone H3 deacetylation biological_process
GO:0070933 histone H4 deacetylation biological_process
GO:0005634 nucleus cellular_component
GO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific) molecular_function
GO:0097372 NAD-dependent histone deacetylase activity (H3-K18 specific) molecular_function
GO:0046969 NAD-dependent histone deacetylase activity (H3-K9 specific) molecular_function
GO:0046970 NAD-dependent histone deacetylase activity (H4-K16 specific) molecular_function

KEGG:

id description
K11404 HDAC3; histone deacetylase 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011470 True 1218 mRNA 0.52 14 26113869 26120015

Neighbor

gene id symbol gene type direction distance location
AMCG00011463 ergic1,LOC107679115,LOC107660430 coding downstream 215042 25877496 ~ 25898827 (-)
AMCG00011459 NA coding downstream 332777 25779962 ~ 25781092 (-)
AMCG00011457 NA coding downstream 383332 25729469 ~ 25730537 (-)
AMCG00011456 NA coding downstream 408201 25681915 ~ 25705668 (-)
AMCG00011454 LOC103356984,LOC101466388,LOC100710497,LOC102193786,LOC102784017 coding downstream 997452 25115557 ~ 25116417 (-)
AMCG00011469 NA coding upstream 18951 26138966 ~ 26162878 (-)
AMCG00011474 NA coding upstream 71111 26191126 ~ 26195850 (-)
AMCG00011475 csnk1a1,LOC106604944,LOC107593197,LOC106611977,LOC107554841 coding upstream 200006 26320021 ~ 26334761 (-)
AMCG00011482 NA coding upstream 228573 26348588 ~ 26362055 (-)
AMCG00011480 NA coding upstream 242376 26362391 ~ 26368116 (-)
G107038 NA non-coding downstream 97189 26015984 ~ 26016680 (-)
G107037 NA non-coding downstream 101422 26009520 ~ 26012447 (-)
G107035 neurl1b non-coding downstream 107413 26005979 ~ 26006456 (-)
G106885 NA non-coding downstream 1122693 24986805 ~ 24991176 (-)
G106862 NA non-coding downstream 1194672 24916164 ~ 24919197 (-)
G107082 hspa9 non-coding upstream 76097 26196112 ~ 26197833 (-)
G107166 NA non-coding upstream 191828 26311843 ~ 26329609 (-)
G107167 hnrnpa0,LOC105905838,LOC107664751,LOC107567479,LOC107598338,LOC107756703,LOC107741073 non-coding upstream 268197 26388212 ~ 26409375 (-)
G107232 NA non-coding upstream 713550 26833565 ~ 26833850 (-)
G107233 NA non-coding upstream 718152 26838167 ~ 26842786 (-)
AMCG00011465 NA other downstream 94469 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 1095537 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 2278795 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 2296326 23813857 ~ 23817543 (-)
AMCG00011414 NA other downstream 2624227 23393104 ~ 23489642 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 386928 26506943 ~ 26516507 (-)
G107713 NA other upstream 3505069 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 3766201 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 4071558 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 6010479 32130494 ~ 32205554 (-)

Expression


Co-expression Network