AMCG00011474


Basic Information

Item Value
gene id AMCG00011474
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26191126 ~ 26195850 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011474
ATGGTGGTGTTGCGGTTGATGAGCTTGGTGAAGACTCCCCCCAGGGTCTCGATACCCAGTGACAGGGGTGTGACGTCCAGCAGCAGCACGTCCGTGACATCGCCGGCTAGCACACCCCCCTGGATGGCGGCCCCGATGGCCACGGCCTCGTCTGGGTTCACAGACTTGCTGGGGGCACGACCAAACAGGTCCTGCACGGTCTGCTGCACCTGTGGGGGGAACCGGAGAAATTGGGGTCAGCGGGGAGTGGAGGGGTGGTTGACAGAGCTGTGGAGACGGGGTCTGTGGCCGTGTCGTTACCTTGGGCATGCGGCTCATGCCTCCCACCAGCAGCACCTCCCCGATGTCGCTCTTGGCGACTTCTGCGTCCTGCATGGCCTTCTGACAGGGGGCCATGGTGCGGCGGATCAGGTCGGCCACGATGCCCTCGAACTGCGAGCGGGTCAGCTTCATGTTCAAGTGCTTGGGGCCGGAGGCATCCATCGTCAGCGTCGGCCAATCAGACGTTTGGTGGCGTACAGGGTGTTGTTGGGGTTGGTGACAGCCTGGCGCTTGGCTGGCATCCCCACCAGCCTCTCTCCATCCGCACTGAAGGCCACAACGGAGGGGGTGGTCCGCGCGCCCTCGGCATTCTCAAGCACCTGCAACGCACAGCAGGCCGGCCTGGTTATAGCGGCCCTCTGCTCAATGCAGCGTCTCACATCAAACTATCAGCACAATGCGGTTGCCTTCGTTTTCTAG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006457 protein folding biological_process
GO:0031101 fin regeneration biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011474 True 741 mRNA 0.63 2 26191126 26195850

Neighbor

gene id symbol gene type direction distance location
AMCG00011469 NA coding downstream 28248 26138966 ~ 26162878 (-)
AMCG00011470 hdac3,LOC107688598,LOC102780161,LOC107746152 coding downstream 71111 26113869 ~ 26120015 (-)
AMCG00011463 ergic1,LOC107679115,LOC107660430 coding downstream 292299 25877496 ~ 25898827 (-)
AMCG00011459 NA coding downstream 410034 25779962 ~ 25781092 (-)
AMCG00011457 NA coding downstream 460589 25729469 ~ 25730537 (-)
AMCG00011475 csnk1a1,LOC106604944,LOC107593197,LOC106611977,LOC107554841 coding upstream 124171 26320021 ~ 26334761 (-)
AMCG00011482 NA coding upstream 152738 26348588 ~ 26362055 (-)
AMCG00011480 NA coding upstream 166541 26362391 ~ 26368116 (-)
AMCG00011481 NA coding upstream 173471 26369321 ~ 26369867 (-)
AMCG00011479 NA coding upstream 174323 26370173 ~ 26377379 (-)
G107057 NA non-coding downstream 63361 26094805 ~ 26127765 (-)
G107038 NA non-coding downstream 174446 26015984 ~ 26016680 (-)
G107037 NA non-coding downstream 178679 26009520 ~ 26012447 (-)
G107035 neurl1b non-coding downstream 184670 26005979 ~ 26006456 (-)
G106885 NA non-coding downstream 1199950 24986805 ~ 24991176 (-)
G107082 hspa9 non-coding upstream 262 26196112 ~ 26197833 (-)
G107166 NA non-coding upstream 115993 26311843 ~ 26329609 (-)
G107167 hnrnpa0,LOC105905838,LOC107664751,LOC107567479,LOC107598338,LOC107756703,LOC107741073 non-coding upstream 192362 26388212 ~ 26409375 (-)
G107232 NA non-coding upstream 637715 26833565 ~ 26833850 (-)
G107233 NA non-coding upstream 642317 26838167 ~ 26842786 (-)
AMCG00011465 NA other downstream 171726 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 1172794 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 2356052 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 2373583 23813857 ~ 23817543 (-)
AMCG00011414 NA other downstream 2701484 23393104 ~ 23489642 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 311093 26506943 ~ 26516507 (-)
G107713 NA other upstream 3429234 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 3690366 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 3995723 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 5934644 32130494 ~ 32205554 (-)

Expression


Co-expression Network