AMCG00011479


Basic Information

Item Value
gene id AMCG00011479
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 26370173 ~ 26377379 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011479
ATGCAGGCCTTGGAGCAGGAGAAGTATTCCTTGCAGAGGGAGGTGGAGTTGAGAGGCCGCATACTTGACAGTCTGAGGTCTGAGTGTGAAACCATCAAAATGCAGCAGAAGGTTTTGTGGGAACAGCAGGAGGCCCAGCTCGAGAGGAGCCATGCTCTTGAGGTCAATGACTACAAGAACAAGATGGAGAGGATGAAGGCCGAGCTGGACGAGACGCGGCTAAGCGAGAAGCAGCTGAGACACAAGCTGGAGCTGCAGGCCGAGTCTCTGAGCAGCAAGACGGAGGAGCTGCGGGCGCTGACGGAGCGCACACATGAGACCATGTCCTCTGAGATGCTGGAGCTGCAGATGGAGAAGATCGAGCTGGAGACTGCCAAGGCTGACCTGGAGCACGAGCTGAACGAGATGAGGTACCGAGAGCAGCAGCTTCAACTGGCCAACACCAACCTGCAGCGCAAGGTGGAGCGCCTGTCCGATGAAAAGGAAGAGCGGGAGAAAGAGGCCATCTCTTACTTTAATGGCTTGGAGAAAGCCCGGGAAGCCAACCAGGATCTCCAACTGCAGCTGGACCAGCTTCTGCAGCAGTCTCAGGACCCCAACAGCAAAGGCAACTCCCTCTTCTCTGAGGTGGAGGACCGGAGAGCGGAGATGGAGCGCCAGCTGATCAGCATGAAGGTGCAGCACCAGTCGCTCCAGAAGCAGCACGCCTTCTCCAGGCAACAGCTCCACCGGATGAAGATGACTGTAAAGGCCGAGCCGTCCTGCATGCCTTCAGAGCTGACCGAAAGCGGAGATGGGACGTACTACACTGACCTCCTGAAAATGCAGCTTTCAAACTCGATGAAGGAGGTGGAGAGGATAGGAGAGGAGCTTTCCCTGCAGAGGATGAAGGCCCTAGCAGAGAGTCAGAGGGTGCTGGAAGTGGAGAGGAGGCTGTTCAGCAGTGAGAGGACGCTCAAGCTGTGCCAGAGCGACAACATCAAGCTGCAGGTCAAACTGGACGAGATCAGGATGAAATACGAACCCAGTGAGGTGAATAGGAATCGTGTGCAGAAGCGCAGGCGAGAGAAGCTGCCGGTGGACGTGCCATCAcagggctctgagctgaaggaATGGGAGCAAGGCCTGGCAGACAGTGGGCCTGCAGAGACGATCGAGCCCGAGCCCGAGCCCGAGCCCCAGACCTGCACTGTGGAACGGCAGGTCATGACCCCTCTCCAGCAGGTCCAGACCCAGGAGCCCAGCACCCCGCAGCCTCACGATTCCAAGTGTGTCCGCATCTGCGAGGAGCCCCCCTCTGCCCACGTCGCCAGCGAGCCCCCCAGGTCAgtgtcctcctcttcctcctgccaacccctctcccttctcctccGCTGCATGAACATCGCCTTCTGtgtcttcttcctcttcctcgaCTTTGGGCGCACTTTCGTTCCCCGCCTGGCCCTGCCCTCGCTGGCCCTGCCCTCGCTGGCCCTGCCCTCGCTGCCCCTGCTTTTCAGGAAGACCGTGACCAGGAAGAACTCTCAGTGACGCTGGGGAGCGCGCCACAAACCCTGCACAGCTGAAGAGACCTGGAGAAAGAAACTGGATGTCTGATAGATAGGCTTCTTACATTTATGTATCTGCAGCTCTTCAGTGCTCCAGTACGGATTTTGATTCAGTTTTGCAGTAACTTGGCTATGACGGCCTGGTAGTGTAATCATGTCAGGATCCTTCAGCACTACTGCTTTGCCGTTGCTGccttttttatgtgttttaaattttatttatagaagtattgtatattgtttacatttattatattcaaattGTGCTACCTGATTGTTCATAGATATAGAGAGAACTGAAACATCTTccttatgtttgtatgtataaaatgtagttttattttcatgtgcacAGTAATTATCCCTAACCTTATCTCTTGTTGGAACCAGTTAATGAGTTTCACAAACACTAACGTATAGCAGGTTAACTGAATACTATTGTGGCTTTGTTTaatgacaaaatatgaaaaaagcatTAATAGCATATGCATCATATTTATGTAGCATAACTGTTTGACAAGGGGTACAGTGCAGGACTTTACTTCTAGAGTATTCATTATATTTCCTTACTAAGTGTTTTAGGAGTGGAATAATAGTTGCTCACAGTACAAAATGTAAAGAGTCTGCACTGCTTAAATCTGataggattattattttaggaatgtcataattcaaattaaaacaaaggccCGTACCCTATTAACAGGTTGAGAAGTTGTGCGAAGGGTAGAGCCGTGTTGAAGATTGTAAGTGTATGGTGGTGATCCTAGTGGCACAGTGGAGTACAGTGAGACATAGGTCTTTAGGTTGTGGTCGGTGTCAGAGAGTTATATGGATGTTGTATAGAAAGCCTGAGTAATGTGACACACAAAGGAGACAGTGTAGGGAAGACTGGTTAGTTTGAGAAGAGGCACAAGAGTGagaaggaagggagagagagagaactggaaACTAAATCATTGgaagtgaatacatttaattccttATTAATAAAGGCAGACAAATCTGAGGTCTGTAGTATGAAAGTATCTGCTGCTTCAGCCTGGCTTGCTTTAAATGCTGTGGCACAATCTAGTGAACTGCTTCCACCGGCTGCTCTCCAGGGTTAATTCCGGAGCTCTAATAATCCTAACAGCTCAATTCTTTCTCTGGCATTGTGGATAAAATAGTTCAAATTACTAGAaacaattttaactttttttcatCATGATTGTTTTATATGGGGGAGAAATAAAGTTTGGCTACTAATATTCCTTTGAGTTAAGCGTTTGCAAACCtctgaataaaaaatatctttatGGATAGCCATAGGTCTCTTGTGcaaagtattacaataataaaaagaaatgtgtaggggaaaagaaaaaatgcattgcattatAACTGCATTATTATGCTGTAAAAAGGATTTTCTTCAGAGAATGCCTTTTCTACTGCTTTCTCGTGTTTTCTGCATAACTGCTGTGTAACTGGTTTCtccattttttttgtactgtatgttaCTTTGGCATTTAATTCTTATGTAATTAAgtcaaatgcttttctttagTCTTTTTACTTGCATGTGTATGACATTTTTTGATTGCACTTTCCTTGTTCTTTCG

Function

GO:

id name namespace
GO:0034501 protein localization to kinetochore biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0007080 mitotic metaphase plate congression biological_process
GO:0000922 spindle pole cellular_component
GO:0000940 condensed chromosome outer kinetochore cellular_component
GO:0005634 nucleus cellular_component
GO:0043515 kinetochore binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011479 True 3154 mRNA 0.47 8 26370173 26377379

Neighbor

gene id symbol gene type direction distance location
AMCG00011481 NA coding downstream 306 26369321 ~ 26369867 (-)
AMCG00011480 NA coding downstream 2057 26362391 ~ 26368116 (-)
AMCG00011482 NA coding downstream 8118 26348588 ~ 26362055 (-)
AMCG00011475 csnk1a1,LOC106604944,LOC107593197,LOC106611977,LOC107554841 coding downstream 35412 26320021 ~ 26334761 (-)
AMCG00011474 NA coding downstream 174323 26191126 ~ 26195850 (-)
AMCG00011484 LOC107598335,LOC107741069,LOC107664724,LOC107567475 coding upstream 69201 26446580 ~ 26490473 (-)
AMCG00011486 LOC106604933 coding upstream 193793 26571172 ~ 26641966 (-)
AMCG00011487 slit3,LOC106604933,LOC106611921 coding upstream 311035 26688414 ~ 26731680 (-)
AMCG00011489 NA coding upstream 427503 26804882 ~ 26818358 (-)
AMCG00011492 pde6a,LOC107662021,LOC107756707,LOC107601194 coding upstream 554007 26931386 ~ 26943383 (-)
G107166 NA non-coding downstream 40564 26311843 ~ 26329609 (-)
G107082 hspa9 non-coding downstream 172340 26196112 ~ 26197833 (-)
G107057 NA non-coding downstream 242408 26094805 ~ 26127765 (-)
G107038 NA non-coding downstream 353493 26015984 ~ 26016680 (-)
G107037 NA non-coding downstream 357726 26009520 ~ 26012447 (-)
G107167 hnrnpa0,LOC105905838,LOC107664751,LOC107567479,LOC107598338,LOC107756703,LOC107741073 non-coding upstream 10833 26388212 ~ 26409375 (-)
G107232 NA non-coding upstream 456186 26833565 ~ 26833850 (-)
G107233 NA non-coding upstream 460788 26838167 ~ 26842786 (-)
G107237 NA non-coding upstream 533136 26910515 ~ 26910758 (-)
G107238 NA non-coding upstream 534629 26912008 ~ 26912220 (-)
AMCG00011465 NA other downstream 350773 26017176 ~ 26019400 (-)
AMCG00011445 higd2a,LOC107750386,LOC107594954,LOC107677392,LOC107595747,LOC107749757 other downstream 1351841 25012205 ~ 25018332 (-)
AMCG00011427 NA other downstream 2535099 23829297 ~ 23835074 (-)
AMCG00011428 NA other downstream 2552630 23813857 ~ 23817543 (-)
AMCG00011414 NA other downstream 2880531 23393104 ~ 23489642 (-)
AMCG00011485 cxcl14,LOC107598373,LOC107664788,LOC107567480,LOC107664739 other upstream 129564 26506943 ~ 26516507 (-)
G107713 NA other upstream 3247705 29625084 ~ 29625387 (-)
AMCG00011536 NA other upstream 3508837 29886216 ~ 29920020 (-)
AMCG00011543 rufy1,LOC102213688,LOC102302734,LOC100709430,LOC102791636,LOC106604316 other upstream 3814194 30191573 ~ 30233509 (-)
AMCG00011560 NA other upstream 5753115 32130494 ~ 32205554 (-)

Expression


Co-expression Network